miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 61878 0.69 0.644794
Target:  5'- cGCCgucgucgGCGCCgcGCGGCgaGcgCGGCGa -3'
miRNA:   3'- -CGGaa-----CGCGG--UGCCGgaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 66574 0.66 0.829967
Target:  5'- cGCCg-GCGCCgGCGGCagccccgagugCUGAgaaGGCGGa -3'
miRNA:   3'- -CGGaaCGCGG-UGCCG-----------GACUag-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 67559 0.68 0.703639
Target:  5'- gGCC--GCGCCGCaccaaaGCCgaccGGUCGGCGGa -3'
miRNA:   3'- -CGGaaCGCGGUGc-----CGGa---CUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 68317 0.66 0.821788
Target:  5'- gGCCgacGCGuuCCGCGGCCUGGUgacCGGg-- -3'
miRNA:   3'- -CGGaa-CGC--GGUGCCGGACUA---GCCguc -5'
10760 3' -59.2 NC_002794.1 + 69735 0.72 0.508595
Target:  5'- cGCCggaGCGCCACGGCCggcGAcgCcGCGGg -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGGa--CUa-GcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 70659 0.78 0.23662
Target:  5'- gGCCUcgUGCGCgGCGGCCgccgCGGCGGu -3'
miRNA:   3'- -CGGA--ACGCGgUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 71097 0.67 0.796314
Target:  5'- aGCCgguCGCCgGCGGCCUGGcCGGagAGg -3'
miRNA:   3'- -CGGaacGCGG-UGCCGGACUaGCCg-UC- -5'
10760 3' -59.2 NC_002794.1 + 72457 0.7 0.575801
Target:  5'- cGCCccGCGCC-CGGCCccg-CGGCGGc -3'
miRNA:   3'- -CGGaaCGCGGuGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 73035 0.68 0.70267
Target:  5'- aGCCU--CGUCcaagACGGCCUGAUCacgcugaacuucuGGCAGg -3'
miRNA:   3'- -CGGAacGCGG----UGCCGGACUAG-------------CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 75363 0.69 0.644794
Target:  5'- cGCCaccgaccCGCCGCGGCCgg--CGGCGGc -3'
miRNA:   3'- -CGGaac----GCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 76836 0.68 0.703639
Target:  5'- gGCCggcgaUGCGCgC-CGGCCUcGUCGGCc- -3'
miRNA:   3'- -CGGa----ACGCG-GuGCCGGAcUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 78424 0.68 0.713297
Target:  5'- cGCUcccgGCGUCACGGUCg---CGGCGGa -3'
miRNA:   3'- -CGGaa--CGCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 80437 0.7 0.615142
Target:  5'- cGCCgccgGCgGCCGcCGGCCc-GUCGGCGGc -3'
miRNA:   3'- -CGGaa--CG-CGGU-GCCGGacUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 80509 0.67 0.751198
Target:  5'- cGUCUucUGCGCCGCGGCgcgcgacgcCUGGcacCGGCGc -3'
miRNA:   3'- -CGGA--ACGCGGUGCCG---------GACUa--GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 83863 0.66 0.825079
Target:  5'- aGCCgucgucccggucgGCGCgACGGCCccgGGcUCGGCGc -3'
miRNA:   3'- -CGGaa-----------CGCGgUGCCGGa--CU-AGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 91265 0.67 0.796314
Target:  5'- cGCCguucgUGgacCGgCGCGGCCUGuacguGUCGGCGc -3'
miRNA:   3'- -CGGa----AC---GCgGUGCCGGAC-----UAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 94002 0.68 0.722889
Target:  5'- cGCCg-GCGCCgGCGGCg-GGcCGGCGGg -3'
miRNA:   3'- -CGGaaCGCGG-UGCCGgaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 94664 0.69 0.644794
Target:  5'- cGCCggcUGUGCC-CGGCCU---UGGCGGa -3'
miRNA:   3'- -CGGa--ACGCGGuGCCGGAcuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 95772 0.67 0.787535
Target:  5'- gGCCgcgacgGCgGCCGgGGCgaGAggcgCGGCGGa -3'
miRNA:   3'- -CGGaa----CG-CGGUgCCGgaCUa---GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 95828 0.68 0.722889
Target:  5'- gGCCgggggagcgGCgGCgGCGGCCgggGAggCGGCGGg -3'
miRNA:   3'- -CGGaa-------CG-CGgUGCCGGa--CUa-GCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.