miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 98970 0.77 0.247917
Target:  5'- cGCCgucggcgGCGCCGUGGCCucggUGGUCGGCGGc -3'
miRNA:   3'- -CGGaa-----CGCGGUGCCGG----ACUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 100801 0.7 0.595421
Target:  5'- gGCCgcuucUGCGCCuACGuGCCgGG-CGGCGGg -3'
miRNA:   3'- -CGGa----ACGCGG-UGC-CGGaCUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 101579 0.74 0.370086
Target:  5'- uGCCggcCGCCGCGGCCgGGggGGCGGg -3'
miRNA:   3'- -CGGaacGCGGUGCCGGaCUagCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 104403 0.67 0.778627
Target:  5'- gGUCgucCGCCGCGGCCUcGGccUCGGCc- -3'
miRNA:   3'- -CGGaacGCGGUGCCGGA-CU--AGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 106221 0.66 0.829967
Target:  5'- aCCgu-CGCCGCGGCCgcgcucgGGUC-GCAGa -3'
miRNA:   3'- cGGaacGCGGUGCCGGa------CUAGcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 106971 0.76 0.311168
Target:  5'- cGCCUcGCGCgGCGGCCggcaCGGCGGu -3'
miRNA:   3'- -CGGAaCGCGgUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 107242 0.69 0.63491
Target:  5'- gGCg--GCGUCGCGGaCCUGGccCGGCGGa -3'
miRNA:   3'- -CGgaaCGCGGUGCC-GGACUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 107515 0.66 0.804954
Target:  5'- uGCCggucGaCGCCgACGGCCgGcgCGGCGc -3'
miRNA:   3'- -CGGaa--C-GCGG-UGCCGGaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 108520 1.09 0.001869
Target:  5'- gGCCUUGCGCCACGGCCUGAUCGGCAGc -3'
miRNA:   3'- -CGGAACGCGGUGCCGGACUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 110625 0.72 0.480792
Target:  5'- aGCCgcgGCGCCGCGGCggcggGGUCGGg-- -3'
miRNA:   3'- -CGGaa-CGCGGUGCCGga---CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 111418 0.66 0.837979
Target:  5'- aCCguagGCGCggaGCcGCCaGAUCGGCAGu -3'
miRNA:   3'- cGGaa--CGCGg--UGcCGGaCUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 111640 0.74 0.402276
Target:  5'- cGCCggucggGCGCCGCGGCCg---CGGCc- -3'
miRNA:   3'- -CGGaa----CGCGGUGCCGGacuaGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 111873 0.68 0.73241
Target:  5'- gGCCUUGUaGCgCGCGGugaCCUGAUCcagGGCGa -3'
miRNA:   3'- -CGGAACG-CG-GUGCC---GGACUAG---CCGUc -5'
10760 3' -59.2 NC_002794.1 + 112344 0.66 0.819303
Target:  5'- gGCCggcgGCGCCgGCGGCggggcggggagcugCUGGaacUCGGCAc -3'
miRNA:   3'- -CGGaa--CGCGG-UGCCG--------------GACU---AGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 114194 0.73 0.439668
Target:  5'- cGCagcgGCGCCACGGCCggcgucuccggCGGCAGc -3'
miRNA:   3'- -CGgaa-CGCGGUGCCGGacua-------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 116893 0.66 0.820961
Target:  5'- cGCCg-GCGCCgucuccgGCGGCC-GGUcCGGCGu -3'
miRNA:   3'- -CGGaaCGCGG-------UGCCGGaCUA-GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 121003 0.68 0.693926
Target:  5'- ----cGgGCCAUGGCCgagGGUCGGCc- -3'
miRNA:   3'- cggaaCgCGGUGCCGGa--CUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 121254 0.71 0.537054
Target:  5'- cGCCgc-CGCCGCGGCC---UCGGCAc -3'
miRNA:   3'- -CGGaacGCGGUGCCGGacuAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 123568 0.74 0.402276
Target:  5'- cGCCUUcgaGCGCCACGGCCgccgccCGuGCAGc -3'
miRNA:   3'- -CGGAA---CGCGGUGCCGGacua--GC-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 125330 0.7 0.595421
Target:  5'- aGCCggagcGCGCCACGGCgcac-CGGCAGc -3'
miRNA:   3'- -CGGaa---CGCGGUGCCGgacuaGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.