miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 188605 0.68 0.731461
Target:  5'- cGCCUUGCGCCGCaGGUgUGcgaaaacGUCucGCGGa -3'
miRNA:   3'- -CGGAACGCGGUG-CCGgAC-------UAGc-CGUC- -5'
10760 3' -59.2 NC_002794.1 + 188349 0.68 0.693926
Target:  5'- cGCCgucGCGCCcgucCGGCCgg--CGGCGGc -3'
miRNA:   3'- -CGGaa-CGCGGu---GCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 186395 0.7 0.625023
Target:  5'- aGCCgca-GCCGCGGCCgcaccaGUCGGCGu -3'
miRNA:   3'- -CGGaacgCGGUGCCGGac----UAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 186276 0.67 0.760449
Target:  5'- cGCCUgGCGCgGCGGCaccg-CGGcCAGg -3'
miRNA:   3'- -CGGAaCGCGgUGCCGgacuaGCC-GUC- -5'
10760 3' -59.2 NC_002794.1 + 185554 0.69 0.664528
Target:  5'- gGCCgcGCGCCcCGcCCUGccgCGGCAGg -3'
miRNA:   3'- -CGGaaCGCGGuGCcGGACua-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 185172 0.69 0.63491
Target:  5'- cGCCggcGCGgCGCGGUCggcgcGGUCGGCGc -3'
miRNA:   3'- -CGGaa-CGCgGUGCCGGa----CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 184576 0.7 0.575801
Target:  5'- cGCCgcgGCGgCggcggccacgcGCGGCCgcggGAUCGGCAa -3'
miRNA:   3'- -CGGaa-CGCgG-----------UGCCGGa---CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 180604 0.67 0.760449
Target:  5'- uCCUcGCGCCGCgGGCCacGAcaCGGCGGc -3'
miRNA:   3'- cGGAaCGCGGUG-CCGGa-CUa-GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 156403 0.75 0.339702
Target:  5'- gGCCg-GCGCCGCGGCCgcggccacGGcCGGCGGg -3'
miRNA:   3'- -CGGaaCGCGGUGCCGGa-------CUaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 152345 0.67 0.769595
Target:  5'- uCCacGCGCUcuACGGCCgcuuggaacgGAUCGGCGa -3'
miRNA:   3'- cGGaaCGCGG--UGCCGGa---------CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 150537 0.75 0.325202
Target:  5'- aGCCgggccgGCGCCAUGGCCgucUCGGCGc -3'
miRNA:   3'- -CGGaa----CGCGGUGCCGGacuAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 149723 0.68 0.722889
Target:  5'- cGCCUgccuCGCUACGGCgUGccgguggagCGGCGGg -3'
miRNA:   3'- -CGGAac--GCGGUGCCGgACua-------GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 148207 0.66 0.845816
Target:  5'- cGCCggcgcGCGCUcgauCGGUCUccGGUCGGCGu -3'
miRNA:   3'- -CGGaa---CGCGGu---GCCGGA--CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 148001 0.67 0.787535
Target:  5'- gGCCUUcgucCGCguCGGCCUcGGUCGGUu- -3'
miRNA:   3'- -CGGAAc---GCGguGCCGGA-CUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 146974 0.75 0.323778
Target:  5'- cGCCUgucgcgaggucgGCGCCGcCGGCCgacGUCGGCGGc -3'
miRNA:   3'- -CGGAa-----------CGCGGU-GCCGGac-UAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 145538 0.68 0.722889
Target:  5'- cGCCUcggGCGCCccgaGCGGCCcGAcCGGUu- -3'
miRNA:   3'- -CGGAa--CGCGG----UGCCGGaCUaGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 145411 0.67 0.751198
Target:  5'- gGCCUUaaaGCGCgGCGcGCCgccGUCGGCu- -3'
miRNA:   3'- -CGGAA---CGCGgUGC-CGGac-UAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 143275 0.66 0.804954
Target:  5'- gGCCcgGCGCC--GGCCgcucggGGUCgGGCGGg -3'
miRNA:   3'- -CGGaaCGCGGugCCGGa-----CUAG-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 141645 0.71 0.527502
Target:  5'- gGCCggcgUG-GCCGCGGCCgc--CGGCGGg -3'
miRNA:   3'- -CGGa---ACgCGGUGCCGGacuaGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 140016 0.69 0.644794
Target:  5'- gGCCgcgGagGCCGCGGCCcccgcGggCGGCGGg -3'
miRNA:   3'- -CGGaa-Cg-CGGUGCCGGa----CuaGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.