Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10760 | 3' | -59.2 | NC_002794.1 | + | 139434 | 0.68 | 0.703639 |
Target: 5'- gGUCUcGUGuCCGCGcGCgCcGAUCGGCAGg -3' miRNA: 3'- -CGGAaCGC-GGUGC-CG-GaCUAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 135739 | 0.67 | 0.787535 |
Target: 5'- aCCUgccGCGCCGCGcCCUcgagGAUCaGGCGGu -3' miRNA: 3'- cGGAa--CGCGGUGCcGGA----CUAG-CCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 131872 | 0.7 | 0.625023 |
Target: 5'- cUCUUggGCGCCGCGGCCUcaucucGGUCGcgcGCGGg -3' miRNA: 3'- cGGAA--CGCGGUGCCGGA------CUAGC---CGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 131521 | 0.67 | 0.795442 |
Target: 5'- cGCCcgugaucgGCGCCgggcccgucaucACGGCCucgcccgUGGUCGGCGc -3' miRNA: 3'- -CGGaa------CGCGG------------UGCCGG-------ACUAGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 131390 | 0.7 | 0.583634 |
Target: 5'- cGCC--GCGCCcgucaucACGGCCucgcccgUGAUCGGCAc -3' miRNA: 3'- -CGGaaCGCGG-------UGCCGG-------ACUAGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 130668 | 0.72 | 0.489057 |
Target: 5'- gGCCgcggGCuccGCCGCGGCCUcGugggaggcgccguGUCGGCAGa -3' miRNA: 3'- -CGGaa--CG---CGGUGCCGGA-C-------------UAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 129060 | 0.66 | 0.837979 |
Target: 5'- cGCgCgacggUGUGUCGCGGCUgg--CGGCGGa -3' miRNA: 3'- -CG-Ga----ACGCGGUGCCGGacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 128164 | 0.67 | 0.796314 |
Target: 5'- cGgCUcGCGCCGCGGacgGGUCGGUg- -3' miRNA: 3'- -CgGAaCGCGGUGCCggaCUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 127346 | 0.69 | 0.671415 |
Target: 5'- uGCCgagacgcucgcggcgGCGgCGCGGCCgcucguGUCGGCGGa -3' miRNA: 3'- -CGGaa-------------CGCgGUGCCGGac----UAGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 126371 | 0.81 | 0.149583 |
Target: 5'- cGCCgcugcguggGCGCCGgGGCCUGcgCGGCGGc -3' miRNA: 3'- -CGGaa-------CGCGGUgCCGGACuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 126291 | 0.74 | 0.362318 |
Target: 5'- uGCUgUGCGCCGCGcGCCUGG-CGGUg- -3' miRNA: 3'- -CGGaACGCGGUGC-CGGACUaGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 125330 | 0.7 | 0.595421 |
Target: 5'- aGCCggagcGCGCCACGGCgcac-CGGCAGc -3' miRNA: 3'- -CGGaa---CGCGGUGCCGgacuaGCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 123568 | 0.74 | 0.402276 |
Target: 5'- cGCCUUcgaGCGCCACGGCCgccgccCGuGCAGc -3' miRNA: 3'- -CGGAA---CGCGGUGCCGGacua--GC-CGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 121254 | 0.71 | 0.537054 |
Target: 5'- cGCCgc-CGCCGCGGCC---UCGGCAc -3' miRNA: 3'- -CGGaacGCGGUGCCGGacuAGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 121003 | 0.68 | 0.693926 |
Target: 5'- ----cGgGCCAUGGCCgagGGUCGGCc- -3' miRNA: 3'- cggaaCgCGGUGCCGGa--CUAGCCGuc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 116893 | 0.66 | 0.820961 |
Target: 5'- cGCCg-GCGCCgucuccgGCGGCC-GGUcCGGCGu -3' miRNA: 3'- -CGGaaCGCGG-------UGCCGGaCUA-GCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 114194 | 0.73 | 0.439668 |
Target: 5'- cGCagcgGCGCCACGGCCggcgucuccggCGGCAGc -3' miRNA: 3'- -CGgaa-CGCGGUGCCGGacua-------GCCGUC- -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 112344 | 0.66 | 0.819303 |
Target: 5'- gGCCggcgGCGCCgGCGGCggggcggggagcugCUGGaacUCGGCAc -3' miRNA: 3'- -CGGaa--CGCGG-UGCCG--------------GACU---AGCCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 111873 | 0.68 | 0.73241 |
Target: 5'- gGCCUUGUaGCgCGCGGugaCCUGAUCcagGGCGa -3' miRNA: 3'- -CGGAACG-CG-GUGCC---GGACUAG---CCGUc -5' |
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10760 | 3' | -59.2 | NC_002794.1 | + | 111640 | 0.74 | 0.402276 |
Target: 5'- cGCCggucggGCGCCGCGGCCg---CGGCc- -3' miRNA: 3'- -CGGaa----CGCGGUGCCGGacuaGCCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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