miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10760 3' -59.2 NC_002794.1 + 32595 0.66 0.837979
Target:  5'- gGCCggggccgGgGCCGgGGCCgggGAUCGGg-- -3'
miRNA:   3'- -CGGaa-----CgCGGUgCCGGa--CUAGCCguc -5'
10760 3' -59.2 NC_002794.1 + 41235 0.66 0.837979
Target:  5'- uCCUcccaCGCCGCGGCCgccGAcgcCGGCGGc -3'
miRNA:   3'- cGGAac--GCGGUGCCGGa--CUa--GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 111418 0.66 0.837979
Target:  5'- aCCguagGCGCggaGCcGCCaGAUCGGCAGu -3'
miRNA:   3'- cGGaa--CGCGg--UGcCGGaCUAGCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 49016 0.66 0.837979
Target:  5'- cGCCgcgGCgGCCGCGGCgUcGUcCGGCGc -3'
miRNA:   3'- -CGGaa-CG-CGGUGCCGgAcUA-GCCGUc -5'
10760 3' -59.2 NC_002794.1 + 148207 0.66 0.845816
Target:  5'- cGCCggcgcGCGCUcgauCGGUCUccGGUCGGCGu -3'
miRNA:   3'- -CGGaa---CGCGGu---GCCGGA--CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 112344 0.66 0.819303
Target:  5'- gGCCggcgGCGCCgGCGGCggggcggggagcugCUGGaacUCGGCAc -3'
miRNA:   3'- -CGGaa--CGCGG-UGCCG--------------GACU---AGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 107515 0.66 0.804954
Target:  5'- uGCCggucGaCGCCgACGGCCgGcgCGGCGc -3'
miRNA:   3'- -CGGaa--C-GCGG-UGCCGGaCuaGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 186276 0.67 0.760449
Target:  5'- cGCCUgGCGCgGCGGCaccg-CGGcCAGg -3'
miRNA:   3'- -CGGAaCGCGgUGCCGgacuaGCC-GUC- -5'
10760 3' -59.2 NC_002794.1 + 152345 0.67 0.769595
Target:  5'- uCCacGCGCUcuACGGCCgcuuggaacgGAUCGGCGa -3'
miRNA:   3'- cGGaaCGCGG--UGCCGGa---------CUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 104403 0.67 0.778627
Target:  5'- gGUCgucCGCCGCGGCCUcGGccUCGGCc- -3'
miRNA:   3'- -CGGaacGCGGUGCCGGA-CU--AGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 95772 0.67 0.787535
Target:  5'- gGCCgcgacgGCgGCCGgGGCgaGAggcgCGGCGGa -3'
miRNA:   3'- -CGGaa----CG-CGGUgCCGgaCUa---GCCGUC- -5'
10760 3' -59.2 NC_002794.1 + 52763 0.67 0.787535
Target:  5'- ----cGCGCCGCGGCCcGggCcGCGGg -3'
miRNA:   3'- cggaaCGCGGUGCCGGaCuaGcCGUC- -5'
10760 3' -59.2 NC_002794.1 + 135739 0.67 0.787535
Target:  5'- aCCUgccGCGCCGCGcCCUcgagGAUCaGGCGGu -3'
miRNA:   3'- cGGAa--CGCGGUGCcGGA----CUAG-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 148001 0.67 0.787535
Target:  5'- gGCCUUcgucCGCguCGGCCUcGGUCGGUu- -3'
miRNA:   3'- -CGGAAc---GCGguGCCGGA-CUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 71097 0.67 0.796314
Target:  5'- aGCCgguCGCCgGCGGCCUGGcCGGagAGg -3'
miRNA:   3'- -CGGaacGCGG-UGCCGGACUaGCCg-UC- -5'
10760 3' -59.2 NC_002794.1 + 131521 0.67 0.795442
Target:  5'- cGCCcgugaucgGCGCCgggcccgucaucACGGCCucgcccgUGGUCGGCGc -3'
miRNA:   3'- -CGGaa------CGCGG------------UGCCGG-------ACUAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 128164 0.67 0.796314
Target:  5'- cGgCUcGCGCCGCGGacgGGUCGGUg- -3'
miRNA:   3'- -CgGAaCGCGGUGCCggaCUAGCCGuc -5'
10760 3' -59.2 NC_002794.1 + 91265 0.67 0.796314
Target:  5'- cGCCguucgUGgacCGgCGCGGCCUGuacguGUCGGCGc -3'
miRNA:   3'- -CGGa----AC---GCgGUGCCGGAC-----UAGCCGUc -5'
10760 3' -59.2 NC_002794.1 + 143275 0.66 0.804954
Target:  5'- gGCCcgGCGCC--GGCCgcucggGGUCgGGCGGg -3'
miRNA:   3'- -CGGaaCGCGGugCCGGa-----CUAG-CCGUC- -5'
10760 3' -59.2 NC_002794.1 + 48044 0.66 0.813448
Target:  5'- cGCCgagUGCGUgcugggCACGGCgCUGAUggcCGGcCAGc -3'
miRNA:   3'- -CGGa--ACGCG------GUGCCG-GACUA---GCC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.