miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 149465 0.66 0.869153
Target:  5'- gGGCGGUcgagGAGCGAGggGgGgCGGCAUg -3'
miRNA:   3'- -UCGUCGa---CUUGCUCgaCgUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 21916 0.66 0.869153
Target:  5'- uGGCGGCggaGACGA-CgGCGgCGGCGCg -3'
miRNA:   3'- -UCGUCGac-UUGCUcGaCGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 145282 0.66 0.869153
Target:  5'- uGGCAGgcCUGAccuCGAccccGCUGUcguauuaaACCGGCGCg -3'
miRNA:   3'- -UCGUC--GACUu--GCU----CGACG--------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 105939 0.66 0.869153
Target:  5'- --gGGCUGGACGcGCUGUACgaaCGGCu- -3'
miRNA:   3'- ucgUCGACUUGCuCGACGUG---GCCGug -5'
10761 3' -57.8 NC_002794.1 + 36418 0.66 0.869153
Target:  5'- cGGCGGCUG-AUGaAGCggaagaccagGCGCCGGaGCu -3'
miRNA:   3'- -UCGUCGACuUGC-UCGa---------CGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 53279 0.66 0.869153
Target:  5'- gGGCGGC-GAGCGAccacuccaGgUGCcgagcggucgGCCGGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCU--------CgACG----------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 144219 0.66 0.869153
Target:  5'- cGCAGCUGGucaucAUGcGCUaCAUgGGCACg -3'
miRNA:   3'- uCGUCGACU-----UGCuCGAcGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 144414 0.66 0.861724
Target:  5'- cGCugGGCccGAGCGcccuGCUGCGCCGaGUGCa -3'
miRNA:   3'- uCG--UCGa-CUUGCu---CGACGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 49107 0.66 0.861724
Target:  5'- cGGC-GCUcGGCGucCUGCACCGGgACc -3'
miRNA:   3'- -UCGuCGAcUUGCucGACGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 62489 0.66 0.861724
Target:  5'- gAGC-GCgagugGAcgGCGGGCgGCgccGCCGGCGCc -3'
miRNA:   3'- -UCGuCGa----CU--UGCUCGaCG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 147434 0.66 0.861724
Target:  5'- uGCuGCUGGACG-GCU--ACgGGCGCg -3'
miRNA:   3'- uCGuCGACUUGCuCGAcgUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 138969 0.66 0.861724
Target:  5'- cGCGGC-GGACGGGUUGgC-CUGGCGg -3'
miRNA:   3'- uCGUCGaCUUGCUCGAC-GuGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 22911 0.66 0.861724
Target:  5'- cGGCGGC-GAccGCG-GCcGCcaaACCGGCACc -3'
miRNA:   3'- -UCGUCGaCU--UGCuCGaCG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 76832 0.66 0.861724
Target:  5'- cAGCGGCc-GGCGAuGC-GCGCCGGCc- -3'
miRNA:   3'- -UCGUCGacUUGCU-CGaCGUGGCCGug -5'
10761 3' -57.8 NC_002794.1 + 48020 0.66 0.859456
Target:  5'- cAGCAGCUucggcgucacgccgGAcgccgaguGCGuGCUGgGCaCGGCGCu -3'
miRNA:   3'- -UCGUCGA--------------CU--------UGCuCGACgUG-GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 53770 0.66 0.854092
Target:  5'- cGGCGGCgGGACGcccGCgacGCGcCCGGCGg -3'
miRNA:   3'- -UCGUCGaCUUGCu--CGa--CGU-GGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 37883 0.66 0.854092
Target:  5'- gGGCGGCggGGGCGguGGCggcgGCAgCGGCuCg -3'
miRNA:   3'- -UCGUCGa-CUUGC--UCGa---CGUgGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 141429 0.66 0.854092
Target:  5'- gGGCGGCggGGGCGccGGggGCGCCGGgaGCg -3'
miRNA:   3'- -UCGUCGa-CUUGC--UCgaCGUGGCCg-UG- -5'
10761 3' -57.8 NC_002794.1 + 119708 0.66 0.854092
Target:  5'- cGGCGGCcacAACGgcGGCUucgGCACCgGGCGCu -3'
miRNA:   3'- -UCGUCGac-UUGC--UCGA---CGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 90435 0.66 0.853318
Target:  5'- uGGCcGCUGAucaucugagGCGAGCUuuucggcgaggccGCGCgCGGCGg -3'
miRNA:   3'- -UCGuCGACU---------UGCUCGA-------------CGUG-GCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.