Results 41 - 60 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 83051 | 0.67 | 0.795551 |
Target: 5'- cGGCGGa-GGACGAGCgcccaccCACgGGCGCa -3' miRNA: 3'- -UCGUCgaCUUGCUCGac-----GUGgCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 108834 | 0.67 | 0.804411 |
Target: 5'- cGGCGGCUuccGAGCGAaccgGgUGUGuuGGCGCg -3' miRNA: 3'- -UCGUCGA---CUUGCU----CgACGUggCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 65944 | 0.67 | 0.795551 |
Target: 5'- cGGCGGCgGuaucgucGCGAGCgGCGgcgucuccuCCGGCACc -3' miRNA: 3'- -UCGUCGaCu------UGCUCGaCGU---------GGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 77326 | 0.67 | 0.795551 |
Target: 5'- uGCccCUGGGCaucGAGCUGCACCucccggaggGGCACu -3' miRNA: 3'- uCGucGACUUG---CUCGACGUGG---------CCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 84023 | 0.67 | 0.795551 |
Target: 5'- gGGCacgAGCgacGCGAGCgGCACgaaCGGCACg -3' miRNA: 3'- -UCG---UCGacuUGCUCGaCGUG---GCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 14588 | 0.67 | 0.786545 |
Target: 5'- aAGCgGGCcGuGGCGAGC-GCGCCgGGCACc -3' miRNA: 3'- -UCG-UCGaC-UUGCUCGaCGUGG-CCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 152730 | 0.67 | 0.777405 |
Target: 5'- cAGCAGCU---CGAGUUGUGCCaGCAg -3' miRNA: 3'- -UCGUCGAcuuGCUCGACGUGGcCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 122665 | 0.67 | 0.777405 |
Target: 5'- uGGCGGCgcaGGcCcGGCUGUGCCGGuCGCg -3' miRNA: 3'- -UCGUCGa--CUuGcUCGACGUGGCC-GUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 142476 | 0.67 | 0.777405 |
Target: 5'- cGGCAcCgUGGACGcguGCgGCGCCGGCAg -3' miRNA: 3'- -UCGUcG-ACUUGCu--CGaCGUGGCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 101514 | 0.67 | 0.804411 |
Target: 5'- uGCGGCacacgccGGCGGGgUGC-CCGGCGCc -3' miRNA: 3'- uCGUCGac-----UUGCUCgACGuGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 8922 | 0.67 | 0.804411 |
Target: 5'- aAGCAGgUGGcCGuGC-GCACCuGCACg -3' miRNA: 3'- -UCGUCgACUuGCuCGaCGUGGcCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 34846 | 0.67 | 0.813119 |
Target: 5'- gAGCgGGCgucgGAGCGGGCgccgcggGCGCCGcGgACg -3' miRNA: 3'- -UCG-UCGa---CUUGCUCGa------CGUGGC-CgUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 146303 | 0.67 | 0.821666 |
Target: 5'- cGCAGgUGuuGACGGGCU-CGCCGacGCGCg -3' miRNA: 3'- uCGUCgAC--UUGCUCGAcGUGGC--CGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 51882 | 0.67 | 0.821666 |
Target: 5'- cAGCAcgaUGAACaacAGCUGCACCcGCACc -3' miRNA: 3'- -UCGUcg-ACUUGc--UCGACGUGGcCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 142406 | 0.67 | 0.821666 |
Target: 5'- aGGCGGCgu--CG-GCgGCGCCgGGCGCg -3' miRNA: 3'- -UCGUCGacuuGCuCGaCGUGG-CCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 193821 | 0.67 | 0.813119 |
Target: 5'- uGGC-GCcGAcGCGucGCgGCGCCGGCACu -3' miRNA: 3'- -UCGuCGaCU-UGCu-CGaCGUGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 142181 | 0.67 | 0.813119 |
Target: 5'- cGGCAGCgcgagGAGCGgcagugcgggaAGCgGCGgCGGCAg -3' miRNA: 3'- -UCGUCGa----CUUGC-----------UCGaCGUgGCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 68265 | 0.67 | 0.813119 |
Target: 5'- uGCAGCUGuucGACGAGCaccggGCcaGCCGG-GCg -3' miRNA: 3'- uCGUCGAC---UUGCUCGa----CG--UGGCCgUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 91238 | 0.67 | 0.813119 |
Target: 5'- cGGCGGCcGu-CGGGCUGCGCucgCGGaCGCc -3' miRNA: 3'- -UCGUCGaCuuGCUCGACGUG---GCC-GUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 40642 | 0.67 | 0.820818 |
Target: 5'- cGCgAGCUGAGCGGGCaGCGacguacucggauuCCGGUc- -3' miRNA: 3'- uCG-UCGACUUGCUCGaCGU-------------GGCCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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