Results 21 - 40 of 162 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 90331 | 0.72 | 0.500971 |
Target: 5'- cGCAGCUGGugGccgucGGCcugugcguccugUGCACCGuGCGCg -3' miRNA: 3'- uCGUCGACUugC-----UCG------------ACGUGGC-CGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 122485 | 0.72 | 0.520222 |
Target: 5'- aGGCcgGGCUGAACGAGUcgGCGCC-GCAg -3' miRNA: 3'- -UCG--UCGACUUGCUCGa-CGUGGcCGUg -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 12520 | 0.72 | 0.514415 |
Target: 5'- cGGCGGCUGggUGgauuggaaggaacgcGGCgcgcacgGCuACCGGCGCa -3' miRNA: 3'- -UCGUCGACuuGC---------------UCGa------CG-UGGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 37748 | 0.72 | 0.539757 |
Target: 5'- cGGCGGCgGcGCG-GCgGCGCCGGCGg -3' miRNA: 3'- -UCGUCGaCuUGCuCGaCGUGGCCGUg -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 58773 | 0.71 | 0.599628 |
Target: 5'- cGCuGCUGGccuacgucaGCGcGCUGCacgACCGGCGCc -3' miRNA: 3'- uCGuCGACU---------UGCuCGACG---UGGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 112998 | 0.71 | 0.556554 |
Target: 5'- uGCAGCUccagGAGCGAGCgcagcuugccguucUGCG-CGGCGCa -3' miRNA: 3'- uCGUCGA----CUUGCUCG--------------ACGUgGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 118695 | 0.71 | 0.583522 |
Target: 5'- cGGCAGCgcccagGAGCGcaugauggccAGCUGCGCguacugggcgcugcuCGGCGCg -3' miRNA: 3'- -UCGUCGa-----CUUGC----------UCGACGUG---------------GCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 94064 | 0.71 | 0.599628 |
Target: 5'- gGGCGGCgggGGGCGAGg-GCACCuacgaccugucGGCGCu -3' miRNA: 3'- -UCGUCGa--CUUGCUCgaCGUGG-----------CCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 182176 | 0.71 | 0.549618 |
Target: 5'- gAGCGGCUGuaccauAACgGGGCcucgGCGCCGGCGu -3' miRNA: 3'- -UCGUCGAC------UUG-CUCGa---CGUGGCCGUg -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 103586 | 0.71 | 0.579508 |
Target: 5'- gAGCAGCggucGGGCaGGCaGCGgCGGCACg -3' miRNA: 3'- -UCGUCGa---CUUGcUCGaCGUgGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 73071 | 0.71 | 0.559534 |
Target: 5'- uGGCAGgaGGACGGGC-GCACCGuCAa -3' miRNA: 3'- -UCGUCgaCUUGCUCGaCGUGGCcGUg -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 115569 | 0.71 | 0.566505 |
Target: 5'- gAGCAGCUcggcGAACGggacguagcGGCUGCGgucgacccgcucgcCCGGCGCc -3' miRNA: 3'- -UCGUCGA----CUUGC---------UCGACGU--------------GGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 184926 | 0.71 | 0.568501 |
Target: 5'- cGGCAGCc-GGCGgucguccugccgcAGCUGCGCCGGCccGCg -3' miRNA: 3'- -UCGUCGacUUGC-------------UCGACGUGGCCG--UG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 55772 | 0.7 | 0.65931 |
Target: 5'- gAGCaggaagaAGCUGGcguuggccuccaGCGAGCgcaGCGCCgGGCGCg -3' miRNA: 3'- -UCG-------UCGACU------------UGCUCGa--CGUGG-CCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 79435 | 0.7 | 0.650214 |
Target: 5'- cGGCGGCg--GCG-GCgGCgACCGGCGCg -3' miRNA: 3'- -UCGUCGacuUGCuCGaCG-UGGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 95824 | 0.7 | 0.640094 |
Target: 5'- cGGCGGCcGGGgGAGCgGCGgCGGCGg -3' miRNA: 3'- -UCGUCGaCUUgCUCGaCGUgGCCGUg -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 108139 | 0.7 | 0.650214 |
Target: 5'- cGcCGGCUGGAuuCGccgccGGgaGCGCCGGCGCg -3' miRNA: 3'- uC-GUCGACUU--GC-----UCgaCGUGGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 184506 | 0.7 | 0.640094 |
Target: 5'- gGGCGGC---GCGGGCcccGCGCgCGGCGCg -3' miRNA: 3'- -UCGUCGacuUGCUCGa--CGUG-GCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 94779 | 0.7 | 0.650214 |
Target: 5'- aGGC-GCUGGGCGAGUUcgAgCGGCACg -3' miRNA: 3'- -UCGuCGACUUGCUCGAcgUgGCCGUG- -5' |
|||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 35148 | 0.7 | 0.640094 |
Target: 5'- gGGCAGCUcgugucGAcCGAGgaGCACCGcGCGg -3' miRNA: 3'- -UCGUCGA------CUuGCUCgaCGUGGC-CGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home