Results 41 - 60 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10761 | 3' | -57.8 | NC_002794.1 | + | 94779 | 0.7 | 0.650214 |
Target: 5'- aGGC-GCUGGGCGAGUUcgAgCGGCACg -3' miRNA: 3'- -UCGuCGACUUGCUCGAcgUgGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 79435 | 0.7 | 0.650214 |
Target: 5'- cGGCGGCg--GCG-GCgGCgACCGGCGCg -3' miRNA: 3'- -UCGUCGacuUGCuCGaCG-UGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 104531 | 0.7 | 0.66032 |
Target: 5'- gGGUGGCgcgGGAaGAGCUGCGCCaGCGu -3' miRNA: 3'- -UCGUCGa--CUUgCUCGACGUGGcCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 69698 | 0.7 | 0.66032 |
Target: 5'- cAGCGGCgucACGcaCUGCAUCGGCACc -3' miRNA: 3'- -UCGUCGacuUGCucGACGUGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 184506 | 0.7 | 0.640094 |
Target: 5'- gGGCGGC---GCGGGCcccGCGCgCGGCGCg -3' miRNA: 3'- -UCGUCGacuUGCUCGa--CGUG-GCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 108139 | 0.7 | 0.650214 |
Target: 5'- cGcCGGCUGGAuuCGccgccGGgaGCGCCGGCGCg -3' miRNA: 3'- uC-GUCGACUU--GC-----UCgaCGUGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 125663 | 0.7 | 0.66032 |
Target: 5'- cGGCGcGCUGAACGGGCUcugGCugACgGGCGa -3' miRNA: 3'- -UCGU-CGACUUGCUCGA---CG--UGgCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 184091 | 0.7 | 0.66032 |
Target: 5'- uAGCGGCaGAACG-GCgaacGCGCCaGCGCc -3' miRNA: 3'- -UCGUCGaCUUGCuCGa---CGUGGcCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 135707 | 0.7 | 0.640094 |
Target: 5'- aGGUAGCgcu-CGAGCUGCugCGuaGCa -3' miRNA: 3'- -UCGUCGacuuGCUCGACGugGCcgUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 125985 | 0.7 | 0.629968 |
Target: 5'- uGCAGCUGGccACGcAGCaGCucCUGGCGCu -3' miRNA: 3'- uCGUCGACU--UGC-UCGaCGu-GGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 191886 | 0.7 | 0.619843 |
Target: 5'- gGGCGGCgGAgGCGGGaucgGCACCGGgACc -3' miRNA: 3'- -UCGUCGaCU-UGCUCga--CGUGGCCgUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 126265 | 0.7 | 0.609727 |
Target: 5'- cGGCGGCUGGcugGCGGcGCugggcuugcugUGCGCCGcGCGCc -3' miRNA: 3'- -UCGUCGACU---UGCU-CG-----------ACGUGGC-CGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 108188 | 0.7 | 0.619843 |
Target: 5'- cGCGGaCUgcGAGCGGcGCUGCGCCGccGCGCc -3' miRNA: 3'- uCGUC-GA--CUUGCU-CGACGUGGC--CGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 68924 | 0.7 | 0.620855 |
Target: 5'- cGCGGCguccucgucgcccGCGGGCcgcgGCGCCGGCGCc -3' miRNA: 3'- uCGUCGacu----------UGCUCGa---CGUGGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 32859 | 0.7 | 0.66032 |
Target: 5'- cAGCGGCcGAgccgGCGGGCgGCGgCGGCGg -3' miRNA: 3'- -UCGUCGaCU----UGCUCGaCGUgGCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 179612 | 0.7 | 0.66032 |
Target: 5'- gAGCGGCgcGAGCGA-CUGC-CgGGCGCu -3' miRNA: 3'- -UCGUCGa-CUUGCUcGACGuGgCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 193271 | 0.69 | 0.690472 |
Target: 5'- cAGCAGCaacAGCG-GCgUGCGCCGGUAg -3' miRNA: 3'- -UCGUCGac-UUGCuCG-ACGUGGCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 127128 | 0.69 | 0.700439 |
Target: 5'- gAGCcGCUGAugGAGaCgaacgGCGCgGGCGa -3' miRNA: 3'- -UCGuCGACUugCUC-Ga----CGUGgCCGUg -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 43215 | 0.69 | 0.690472 |
Target: 5'- uGCGGauugaUGAccACGAugcGCUGCAgCGGCACc -3' miRNA: 3'- uCGUCg----ACU--UGCU---CGACGUgGCCGUG- -5' |
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10761 | 3' | -57.8 | NC_002794.1 | + | 118261 | 0.69 | 0.700439 |
Target: 5'- aGGuCGGCcgGGGCG-GCgGCGCCGGCGu -3' miRNA: 3'- -UC-GUCGa-CUUGCuCGaCGUGGCCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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