miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 108002 1.1 0.001817
Target:  5'- cAGCAGCUGAACGAGCUGCACCGGCACg -3'
miRNA:   3'- -UCGUCGACUUGCUCGACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 58072 0.81 0.15304
Target:  5'- cGGCGGCgGGACGGGCgGC-CCGGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCUCGaCGuGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 58647 0.8 0.177932
Target:  5'- cGCAGCUGGgcgACGGGCUGCugcaGCCGGC-Cg -3'
miRNA:   3'- uCGUCGACU---UGCUCGACG----UGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 84282 0.79 0.211458
Target:  5'- cGCAGCUGccGACGGGgaGCGgCGGCGCu -3'
miRNA:   3'- uCGUCGAC--UUGCUCgaCGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 100391 0.77 0.288079
Target:  5'- cGCGGCgUGGACGAcguggcguggccGCUGUACCGGUGCc -3'
miRNA:   3'- uCGUCG-ACUUGCU------------CGACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 103789 0.76 0.308602
Target:  5'- cGGCGGCUGAGCuuGAGgUGCGCCugcgacggcGGCGCc -3'
miRNA:   3'- -UCGUCGACUUG--CUCgACGUGG---------CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 114532 0.75 0.356051
Target:  5'- cGGCAGCcGcGCGAGCUGCgcgagcuguucuucgGCCaGGCGCa -3'
miRNA:   3'- -UCGUCGaCuUGCUCGACG---------------UGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 108973 0.74 0.401599
Target:  5'- cGGCAGCUGAGCGuGGCgaaGCugCuGCGCc -3'
miRNA:   3'- -UCGUCGACUUGC-UCGa--CGugGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 60618 0.74 0.410114
Target:  5'- cAGCAGaaccGGACGGGCggacccgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCga--CUUGCUCGa------CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 150212 0.74 0.410114
Target:  5'- gAGCGGCUGcugcCGAGCUGCGugcgaCGGCAg -3'
miRNA:   3'- -UCGUCGACuu--GCUCGACGUg----GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 106048 0.74 0.41874
Target:  5'- cGCGGCUGAACuucgucaacguGGGC--CGCCGGCACg -3'
miRNA:   3'- uCGUCGACUUG-----------CUCGacGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 125532 0.74 0.436318
Target:  5'- cGCGGC-GAACGAGC-GCGgCGGCAg -3'
miRNA:   3'- uCGUCGaCUUGCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 112356 0.74 0.436318
Target:  5'- cGGCGGCgGGGCgggGAGCUGCuggaACuCGGCACg -3'
miRNA:   3'- -UCGUCGaCUUG---CUCGACG----UG-GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 80521 0.73 0.445265
Target:  5'- cGCGGCgc-GCGAcGCcugGCACCGGCGCc -3'
miRNA:   3'- uCGUCGacuUGCU-CGa--CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 123452 0.73 0.454314
Target:  5'- gAGCGGCUGGcCGAGCaccUGUACUacgaGGCGCu -3'
miRNA:   3'- -UCGUCGACUuGCUCG---ACGUGG----CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 145728 0.73 0.463462
Target:  5'- gGGC-GCUGGAgGcGGCgGCGCCGGCAUc -3'
miRNA:   3'- -UCGuCGACUUgC-UCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 50588 0.73 0.472705
Target:  5'- cGGCGGCUGggUG-GCcgGCGCCGGgGg -3'
miRNA:   3'- -UCGUCGACuuGCuCGa-CGUGGCCgUg -5'
10761 3' -57.8 NC_002794.1 + 194149 0.72 0.500971
Target:  5'- cAGCAGCgcccGCGAGCccUGCCGGCGCg -3'
miRNA:   3'- -UCGUCGacu-UGCUCGacGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 90331 0.72 0.500971
Target:  5'- cGCAGCUGGugGccgucGGCcugugcguccugUGCACCGuGCGCg -3'
miRNA:   3'- uCGUCGACUugC-----UCG------------ACGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 56096 0.72 0.510559
Target:  5'- cGCAGCacguGCGuGCUGCGCUGGCcCg -3'
miRNA:   3'- uCGUCGacu-UGCuCGACGUGGCCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.