miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 12520 0.72 0.514415
Target:  5'- cGGCGGCUGggUGgauuggaaggaacgcGGCgcgcacgGCuACCGGCGCa -3'
miRNA:   3'- -UCGUCGACuuGC---------------UCGa------CG-UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 122485 0.72 0.520222
Target:  5'- aGGCcgGGCUGAACGAGUcgGCGCC-GCAg -3'
miRNA:   3'- -UCG--UCGACUUGCUCGa-CGUGGcCGUg -5'
10761 3' -57.8 NC_002794.1 + 23916 0.72 0.529957
Target:  5'- cAGCAGCgUGGGCGAGCgaGCGauccgagcCCGGcCGCg -3'
miRNA:   3'- -UCGUCG-ACUUGCUCGa-CGU--------GGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 37748 0.72 0.539757
Target:  5'- cGGCGGCgGcGCG-GCgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCGaCuUGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 182176 0.71 0.549618
Target:  5'- gAGCGGCUGuaccauAACgGGGCcucgGCGCCGGCGu -3'
miRNA:   3'- -UCGUCGAC------UUG-CUCGa---CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 112998 0.71 0.556554
Target:  5'- uGCAGCUccagGAGCGAGCgcagcuugccguucUGCG-CGGCGCa -3'
miRNA:   3'- uCGUCGA----CUUGCUCG--------------ACGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 73071 0.71 0.559534
Target:  5'- uGGCAGgaGGACGGGC-GCACCGuCAa -3'
miRNA:   3'- -UCGUCgaCUUGCUCGaCGUGGCcGUg -5'
10761 3' -57.8 NC_002794.1 + 115569 0.71 0.566505
Target:  5'- gAGCAGCUcggcGAACGggacguagcGGCUGCGgucgacccgcucgcCCGGCGCc -3'
miRNA:   3'- -UCGUCGA----CUUGC---------UCGACGU--------------GGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 184926 0.71 0.568501
Target:  5'- cGGCAGCc-GGCGgucguccugccgcAGCUGCGCCGGCccGCg -3'
miRNA:   3'- -UCGUCGacUUGC-------------UCGACGUGGCCG--UG- -5'
10761 3' -57.8 NC_002794.1 + 103586 0.71 0.579508
Target:  5'- gAGCAGCggucGGGCaGGCaGCGgCGGCACg -3'
miRNA:   3'- -UCGUCGa---CUUGcUCGaCGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 118695 0.71 0.583522
Target:  5'- cGGCAGCgcccagGAGCGcaugauggccAGCUGCGCguacugggcgcugcuCGGCGCg -3'
miRNA:   3'- -UCGUCGa-----CUUGC----------UCGACGUG---------------GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94064 0.71 0.599628
Target:  5'- gGGCGGCgggGGGCGAGg-GCACCuacgaccugucGGCGCu -3'
miRNA:   3'- -UCGUCGa--CUUGCUCgaCGUGG-----------CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 58773 0.71 0.599628
Target:  5'- cGCuGCUGGccuacgucaGCGcGCUGCacgACCGGCGCc -3'
miRNA:   3'- uCGuCGACU---------UGCuCGACG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 126265 0.7 0.609727
Target:  5'- cGGCGGCUGGcugGCGGcGCugggcuugcugUGCGCCGcGCGCc -3'
miRNA:   3'- -UCGUCGACU---UGCU-CG-----------ACGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 108188 0.7 0.619843
Target:  5'- cGCGGaCUgcGAGCGGcGCUGCGCCGccGCGCc -3'
miRNA:   3'- uCGUC-GA--CUUGCU-CGACGUGGC--CGUG- -5'
10761 3' -57.8 NC_002794.1 + 191886 0.7 0.619843
Target:  5'- gGGCGGCgGAgGCGGGaucgGCACCGGgACc -3'
miRNA:   3'- -UCGUCGaCU-UGCUCga--CGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 68924 0.7 0.620855
Target:  5'- cGCGGCguccucgucgcccGCGGGCcgcgGCGCCGGCGCc -3'
miRNA:   3'- uCGUCGacu----------UGCUCGa---CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 192945 0.7 0.629968
Target:  5'- cAGCAGCUGcgcagacaggccGACGAGCcgUGCaggACCagGGCGCg -3'
miRNA:   3'- -UCGUCGAC------------UUGCUCG--ACG---UGG--CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 122887 0.7 0.629968
Target:  5'- cGCcgAGCUcAACGAGC-GCACgGGCGCc -3'
miRNA:   3'- uCG--UCGAcUUGCUCGaCGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 125985 0.7 0.629968
Target:  5'- uGCAGCUGGccACGcAGCaGCucCUGGCGCu -3'
miRNA:   3'- uCGUCGACU--UGC-UCGaCGu-GGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.