miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 35148 0.7 0.640094
Target:  5'- gGGCAGCUcgugucGAcCGAGgaGCACCGcGCGg -3'
miRNA:   3'- -UCGUCGA------CUuGCUCgaCGUGGC-CGUg -5'
10761 3' -57.8 NC_002794.1 + 135707 0.7 0.640094
Target:  5'- aGGUAGCgcu-CGAGCUGCugCGuaGCa -3'
miRNA:   3'- -UCGUCGacuuGCUCGACGugGCcgUG- -5'
10761 3' -57.8 NC_002794.1 + 49683 0.7 0.640094
Target:  5'- cGCaAGC-GGACGAGUcGCGUCGGCACg -3'
miRNA:   3'- uCG-UCGaCUUGCUCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 184506 0.7 0.640094
Target:  5'- gGGCGGC---GCGGGCcccGCGCgCGGCGCg -3'
miRNA:   3'- -UCGUCGacuUGCUCGa--CGUG-GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 95824 0.7 0.640094
Target:  5'- cGGCGGCcGGGgGAGCgGCGgCGGCGg -3'
miRNA:   3'- -UCGUCGaCUUgCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 114656 0.7 0.650214
Target:  5'- cGguGCUGuucGCGcGC-GCGCCGGUACu -3'
miRNA:   3'- uCguCGACu--UGCuCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94779 0.7 0.650214
Target:  5'- aGGC-GCUGGGCGAGUUcgAgCGGCACg -3'
miRNA:   3'- -UCGuCGACUUGCUCGAcgUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 108139 0.7 0.650214
Target:  5'- cGcCGGCUGGAuuCGccgccGGgaGCGCCGGCGCg -3'
miRNA:   3'- uC-GUCGACUU--GC-----UCgaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 79435 0.7 0.650214
Target:  5'- cGGCGGCg--GCG-GCgGCgACCGGCGCg -3'
miRNA:   3'- -UCGUCGacuUGCuCGaCG-UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 55772 0.7 0.65931
Target:  5'- gAGCaggaagaAGCUGGcguuggccuccaGCGAGCgcaGCGCCgGGCGCg -3'
miRNA:   3'- -UCG-------UCGACU------------UGCUCGa--CGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 69698 0.7 0.66032
Target:  5'- cAGCGGCgucACGcaCUGCAUCGGCACc -3'
miRNA:   3'- -UCGUCGacuUGCucGACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 104531 0.7 0.66032
Target:  5'- gGGUGGCgcgGGAaGAGCUGCGCCaGCGu -3'
miRNA:   3'- -UCGUCGa--CUUgCUCGACGUGGcCGUg -5'
10761 3' -57.8 NC_002794.1 + 125663 0.7 0.66032
Target:  5'- cGGCGcGCUGAACGGGCUcugGCugACgGGCGa -3'
miRNA:   3'- -UCGU-CGACUUGCUCGA---CG--UGgCCGUg -5'
10761 3' -57.8 NC_002794.1 + 184091 0.7 0.66032
Target:  5'- uAGCGGCaGAACG-GCgaacGCGCCaGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCuCGa---CGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 32859 0.7 0.66032
Target:  5'- cAGCGGCcGAgccgGCGGGCgGCGgCGGCGg -3'
miRNA:   3'- -UCGUCGaCU----UGCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 179612 0.7 0.66032
Target:  5'- gAGCGGCgcGAGCGA-CUGC-CgGGCGCu -3'
miRNA:   3'- -UCGUCGa-CUUGCUcGACGuGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 9309 0.69 0.667382
Target:  5'- aAGCgacGGCggGAaagaggaaggaaacGCGGGUgcgUGCGCCGGCACg -3'
miRNA:   3'- -UCG---UCGa-CU--------------UGCUCG---ACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 194958 0.69 0.670404
Target:  5'- cAGCAGCggcacGAACGccGGCUcguacaggcacaGCGCCGcGCGCa -3'
miRNA:   3'- -UCGUCGa----CUUGC--UCGA------------CGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 86956 0.69 0.679454
Target:  5'- gAGCGucgacguccGCUGcGGCGAGCUGCGacgagguCCGGCGg -3'
miRNA:   3'- -UCGU---------CGAC-UUGCUCGACGU-------GGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 59514 0.69 0.680457
Target:  5'- cGGCGGCUu--CccGCUGCACCcGGCGCu -3'
miRNA:   3'- -UCGUCGAcuuGcuCGACGUGG-CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.