miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 62327 0.69 0.680457
Target:  5'- cGCcccucGCUGGcgGAGCccGCGCCGGCGCa -3'
miRNA:   3'- uCGu----CGACUugCUCGa-CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94011 0.69 0.680457
Target:  5'- cGGCGGCgGGccgGCGGGUUcCGCCGGCGg -3'
miRNA:   3'- -UCGUCGaCU---UGCUCGAcGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 98905 0.69 0.689472
Target:  5'- cGCGGUcucgacgacuucaUGAGCGGGCUGgGCgCGGC-Cg -3'
miRNA:   3'- uCGUCG-------------ACUUGCUCGACgUG-GCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 43215 0.69 0.690472
Target:  5'- uGCGGauugaUGAccACGAugcGCUGCAgCGGCACc -3'
miRNA:   3'- uCGUCg----ACU--UGCU---CGACGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 193271 0.69 0.690472
Target:  5'- cAGCAGCaacAGCG-GCgUGCGCCGGUAg -3'
miRNA:   3'- -UCGUCGac-UUGCuCG-ACGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 44429 0.69 0.690472
Target:  5'- gAGCGGCUcGACGA----CACCGGCGCg -3'
miRNA:   3'- -UCGUCGAcUUGCUcgacGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 118261 0.69 0.700439
Target:  5'- aGGuCGGCcgGGGCG-GCgGCGCCGGCGu -3'
miRNA:   3'- -UC-GUCGa-CUUGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 127128 0.69 0.700439
Target:  5'- gAGCcGCUGAugGAGaCgaacgGCGCgGGCGa -3'
miRNA:   3'- -UCGuCGACUugCUC-Ga----CGUGgCCGUg -5'
10761 3' -57.8 NC_002794.1 + 9040 0.69 0.700439
Target:  5'- -cCGGCUGGACGAGaucaacgagGCGgUGGCGCa -3'
miRNA:   3'- ucGUCGACUUGCUCga-------CGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 107058 0.69 0.700439
Target:  5'- aGGCGGC-GGGCGcGGC-GcCGCCGGCAUg -3'
miRNA:   3'- -UCGUCGaCUUGC-UCGaC-GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 183425 0.69 0.700439
Target:  5'- aAGCGGgaGcGgGAGCgGgACCGGCGCc -3'
miRNA:   3'- -UCGUCgaCuUgCUCGaCgUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 111971 0.69 0.71035
Target:  5'- cGUAGCcGAGCGucAGgUcCACCGGCACg -3'
miRNA:   3'- uCGUCGaCUUGC--UCgAcGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 81544 0.69 0.71035
Target:  5'- gAGC-GCUGGACG-GCUGCcGCCGcCGCc -3'
miRNA:   3'- -UCGuCGACUUGCuCGACG-UGGCcGUG- -5'
10761 3' -57.8 NC_002794.1 + 94222 0.69 0.71035
Target:  5'- uGGCGGCgacGGGCGGGC-GgGCCGGUgACg -3'
miRNA:   3'- -UCGUCGa--CUUGCUCGaCgUGGCCG-UG- -5'
10761 3' -57.8 NC_002794.1 + 56350 0.69 0.71035
Target:  5'- gAGCAGCUcGAagaggcggucgACGuGCUcgggaucCACCGGCACg -3'
miRNA:   3'- -UCGUCGA-CU-----------UGCuCGAc------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 64800 0.69 0.71035
Target:  5'- cGCGGC-GAGCGAcGCcGCggacggcggcgaGCCGGCGCc -3'
miRNA:   3'- uCGUCGaCUUGCU-CGaCG------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 89390 0.69 0.720195
Target:  5'- gAGCGGUcgcggUGAGgucCGuGgaGCGCCGGCGCc -3'
miRNA:   3'- -UCGUCG-----ACUU---GCuCgaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 122554 0.69 0.720195
Target:  5'- uGUGGCUGGACGAGaacgcGCAgCGGCuGCu -3'
miRNA:   3'- uCGUCGACUUGCUCga---CGUgGCCG-UG- -5'
10761 3' -57.8 NC_002794.1 + 141526 0.69 0.720195
Target:  5'- cGC--CUGGGCGGGCUGCucGCCgaaGGCGCg -3'
miRNA:   3'- uCGucGACUUGCUCGACG--UGG---CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 192133 0.69 0.720195
Target:  5'- uGCuGCUGuu---GCUGCuGCCGGCGCg -3'
miRNA:   3'- uCGuCGACuugcuCGACG-UGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.