miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 72210 0.66 0.849419
Target:  5'- cGCAGC-GGGC--GCUGUcggaagaacacgaugGCCGGCACg -3'
miRNA:   3'- uCGUCGaCUUGcuCGACG---------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 182539 0.66 0.846264
Target:  5'- cGCGGC--AGCGA-CUGCgccgcgGCCGGCACc -3'
miRNA:   3'- uCGUCGacUUGCUcGACG------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 144883 0.66 0.846264
Target:  5'- cGGguGCgGGGCGAgacgcucgcgccGCUGggccccgcCGCCGGCACc -3'
miRNA:   3'- -UCguCGaCUUGCU------------CGAC--------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 108349 0.66 0.846264
Target:  5'- aGGUGGCgGAGCGGGgaGCggaggaggACCgGGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCUCgaCG--------UGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 181221 0.66 0.846264
Target:  5'- aAGCAGC--GACGAGauccgGCGaCGGCGCg -3'
miRNA:   3'- -UCGUCGacUUGCUCga---CGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 96897 0.66 0.846264
Target:  5'- gGGCAgGCgucGGGCGgagguGGCggagGCGCCGGCGa -3'
miRNA:   3'- -UCGU-CGa--CUUGC-----UCGa---CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 123663 0.66 0.844676
Target:  5'- cGCAGCUGGugucgcucggccCGGGCUGggaGCaGGCGCg -3'
miRNA:   3'- uCGUCGACUu-----------GCUCGACg--UGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 194649 0.66 0.838246
Target:  5'- cAGCAcCUGcguCG-GCUGCGCCGGguCc -3'
miRNA:   3'- -UCGUcGACuu-GCuCGACGUGGCCguG- -5'
10761 3' -57.8 NC_002794.1 + 117840 0.66 0.838246
Target:  5'- gAGCAGCgGcACgGAGCgcgacggGgGCUGGCGCg -3'
miRNA:   3'- -UCGUCGaCuUG-CUCGa------CgUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 32920 0.66 0.838246
Target:  5'- cGGCAGCaGGucgGCGGGaaGCGCuCGGCGg -3'
miRNA:   3'- -UCGUCGaCU---UGCUCgaCGUG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 52096 0.66 0.838246
Target:  5'- uGCuGCUGGcCGuGCUGCAgCuGCACc -3'
miRNA:   3'- uCGuCGACUuGCuCGACGUgGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 17822 0.66 0.838246
Target:  5'- uGCAGCUGuACGugaccacCUGCACCGaGcCGCu -3'
miRNA:   3'- uCGUCGACuUGCuc-----GACGUGGC-C-GUG- -5'
10761 3' -57.8 NC_002794.1 + 80461 0.66 0.830872
Target:  5'- cGGCGgcccGCUGcccgucuuccgcguCGAGCUGgcgcacCACCGGCACg -3'
miRNA:   3'- -UCGU----CGACuu------------GCUCGAC------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 116864 0.66 0.830044
Target:  5'- cGGCGGCcGuguCGcGCUcgucagggggGCGCCGGCGCc -3'
miRNA:   3'- -UCGUCGaCuu-GCuCGA----------CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 13279 0.66 0.830044
Target:  5'- cGGCcGCUGuuGACG-GCgGCAUgGGCGCu -3'
miRNA:   3'- -UCGuCGAC--UUGCuCGaCGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 55169 0.66 0.830044
Target:  5'- gAGC-GCcGAGCGGGCgacucgagGCggcggcccuaacACCGGCGCg -3'
miRNA:   3'- -UCGuCGaCUUGCUCGa-------CG------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 108442 0.66 0.830044
Target:  5'- cGGCGGCacucGCGgcGGCgGCccGCCGGCACg -3'
miRNA:   3'- -UCGUCGacu-UGC--UCGaCG--UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 96377 0.66 0.830044
Target:  5'- cGUGGCgccGAGCGAGUggaugGUcgcgccuuACCGGCGCu -3'
miRNA:   3'- uCGUCGa--CUUGCUCGa----CG--------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 189657 0.66 0.830044
Target:  5'- uAGcCGGCUGGcCGAGCggucGCcCCGGC-Cg -3'
miRNA:   3'- -UC-GUCGACUuGCUCGa---CGuGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 114727 0.66 0.829214
Target:  5'- cGGCGGCUccgGGuucguCGAGCcgGCgccgcccGCCGGCGCc -3'
miRNA:   3'- -UCGUCGA---CUu----GCUCGa-CG-------UGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.