miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 63686 0.67 0.821666
Target:  5'- cGCGGCgacGAcgaugACGAcGacgGCGCCGGCGCc -3'
miRNA:   3'- uCGUCGa--CU-----UGCU-Cga-CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 146303 0.67 0.821666
Target:  5'- cGCAGgUGuuGACGGGCU-CGCCGacGCGCg -3'
miRNA:   3'- uCGUCgAC--UUGCUCGAcGUGGC--CGUG- -5'
10761 3' -57.8 NC_002794.1 + 51882 0.67 0.821666
Target:  5'- cAGCAcgaUGAACaacAGCUGCACCcGCACc -3'
miRNA:   3'- -UCGUcg-ACUUGc--UCGACGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 142406 0.67 0.821666
Target:  5'- aGGCGGCgu--CG-GCgGCGCCgGGCGCg -3'
miRNA:   3'- -UCGUCGacuuGCuCGaCGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 40642 0.67 0.820818
Target:  5'- cGCgAGCUGAGCGGGCaGCGacguacucggauuCCGGUc- -3'
miRNA:   3'- uCG-UCGACUUGCUCGaCGU-------------GGCCGug -5'
10761 3' -57.8 NC_002794.1 + 193821 0.67 0.813119
Target:  5'- uGGC-GCcGAcGCGucGCgGCGCCGGCACu -3'
miRNA:   3'- -UCGuCGaCU-UGCu-CGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 142181 0.67 0.813119
Target:  5'- cGGCAGCgcgagGAGCGgcagugcgggaAGCgGCGgCGGCAg -3'
miRNA:   3'- -UCGUCGa----CUUGC-----------UCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 68265 0.67 0.813119
Target:  5'- uGCAGCUGuucGACGAGCaccggGCcaGCCGG-GCg -3'
miRNA:   3'- uCGUCGAC---UUGCUCGa----CG--UGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 91238 0.67 0.813119
Target:  5'- cGGCGGCcGu-CGGGCUGCGCucgCGGaCGCc -3'
miRNA:   3'- -UCGUCGaCuuGCUCGACGUG---GCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 34846 0.67 0.813119
Target:  5'- gAGCgGGCgucgGAGCGGGCgccgcggGCGCCGcGgACg -3'
miRNA:   3'- -UCG-UCGa---CUUGCUCGa------CGUGGC-CgUG- -5'
10761 3' -57.8 NC_002794.1 + 108834 0.67 0.804411
Target:  5'- cGGCGGCUuccGAGCGAaccgGgUGUGuuGGCGCg -3'
miRNA:   3'- -UCGUCGA---CUUGCU----CgACGUggCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 101514 0.67 0.804411
Target:  5'- uGCGGCacacgccGGCGGGgUGC-CCGGCGCc -3'
miRNA:   3'- uCGUCGac-----UUGCUCgACGuGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 8922 0.67 0.804411
Target:  5'- aAGCAGgUGGcCGuGC-GCACCuGCACg -3'
miRNA:   3'- -UCGUCgACUuGCuCGaCGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 83051 0.67 0.795551
Target:  5'- cGGCGGa-GGACGAGCgcccaccCACgGGCGCa -3'
miRNA:   3'- -UCGUCgaCUUGCUCGac-----GUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 65944 0.67 0.795551
Target:  5'- cGGCGGCgGuaucgucGCGAGCgGCGgcgucuccuCCGGCACc -3'
miRNA:   3'- -UCGUCGaCu------UGCUCGaCGU---------GGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 77326 0.67 0.795551
Target:  5'- uGCccCUGGGCaucGAGCUGCACCucccggaggGGCACu -3'
miRNA:   3'- uCGucGACUUG---CUCGACGUGG---------CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 84023 0.67 0.795551
Target:  5'- gGGCacgAGCgacGCGAGCgGCACgaaCGGCACg -3'
miRNA:   3'- -UCG---UCGacuUGCUCGaCGUG---GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 14588 0.67 0.786545
Target:  5'- aAGCgGGCcGuGGCGAGC-GCGCCgGGCACc -3'
miRNA:   3'- -UCG-UCGaC-UUGCUCGaCGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 122665 0.67 0.777405
Target:  5'- uGGCGGCgcaGGcCcGGCUGUGCCGGuCGCg -3'
miRNA:   3'- -UCGUCGa--CUuGcUCGACGUGGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 142476 0.67 0.777405
Target:  5'- cGGCAcCgUGGACGcguGCgGCGCCGGCAg -3'
miRNA:   3'- -UCGUcG-ACUUGCu--CGaCGUGGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.