miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 142476 0.67 0.777405
Target:  5'- cGGCAcCgUGGACGcguGCgGCGCCGGCAg -3'
miRNA:   3'- -UCGUcG-ACUUGCu--CGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 104557 0.67 0.774637
Target:  5'- nGuCAGCUGGauGCGguccaccagcuucaGGUUGUugCGGCACg -3'
miRNA:   3'- uC-GUCGACU--UGC--------------UCGACGugGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 91651 0.68 0.768136
Target:  5'- --gAGCUGA---AGCUGCACCugucGGCGCa -3'
miRNA:   3'- ucgUCGACUugcUCGACGUGG----CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 113513 0.68 0.768136
Target:  5'- gAGCcGCgGAGgGAGCUcCGCCGGCuCg -3'
miRNA:   3'- -UCGuCGaCUUgCUCGAcGUGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 12219 0.68 0.768136
Target:  5'- cGGCGGCgu--CG-GCgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCGacuuGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 139010 0.68 0.75875
Target:  5'- uGCGGCUGAA-GAGCUcGC-CgCGGCGa -3'
miRNA:   3'- uCGUCGACUUgCUCGA-CGuG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 99784 0.68 0.75875
Target:  5'- uGcCGGCgucGAcuACGAGCgcgcgccgcggGCGCCGGCGCc -3'
miRNA:   3'- uC-GUCGa--CU--UGCUCGa----------CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 117511 0.68 0.75875
Target:  5'- cAGguGCUGGG-----UGCGCCGGCGCa -3'
miRNA:   3'- -UCguCGACUUgcucgACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 101589 0.68 0.75875
Target:  5'- cGCGGCcGGGgGGGCggGUGCCGGCcCg -3'
miRNA:   3'- uCGUCGaCUUgCUCGa-CGUGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 72336 0.68 0.749253
Target:  5'- uGCAGUcGGugGAgccgguggcGCUGCACCGucuGCGCg -3'
miRNA:   3'- uCGUCGaCUugCU---------CGACGUGGC---CGUG- -5'
10761 3' -57.8 NC_002794.1 + 84518 0.68 0.749253
Target:  5'- uGUAGCgaaGACGAGCUGUAacgcaCGcGCACg -3'
miRNA:   3'- uCGUCGac-UUGCUCGACGUg----GC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 103900 0.68 0.749253
Target:  5'- gAGCAGCgGGGCGAGaa-CGCCGcGCAa -3'
miRNA:   3'- -UCGUCGaCUUGCUCgacGUGGC-CGUg -5'
10761 3' -57.8 NC_002794.1 + 101802 0.68 0.749253
Target:  5'- cGCcGCUGGuugGCGcAGCggcGCGCCGuGCGCg -3'
miRNA:   3'- uCGuCGACU---UGC-UCGa--CGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 123333 0.68 0.749253
Target:  5'- cGCAGCUGGGgGuGGCguuccaacgGUACCGGcCGCu -3'
miRNA:   3'- uCGUCGACUUgC-UCGa--------CGUGGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 193745 0.68 0.749253
Target:  5'- cGCGGCUucGGCGAGCgacCGCCGGCc- -3'
miRNA:   3'- uCGUCGAc-UUGCUCGac-GUGGCCGug -5'
10761 3' -57.8 NC_002794.1 + 38149 0.68 0.748298
Target:  5'- gAGCAGgaGGuagGCGAgcaggcgGCUGCGCuCGGCGa -3'
miRNA:   3'- -UCGUCgaCU---UGCU-------CGACGUG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 129219 0.68 0.739656
Target:  5'- cGGCGGUggauaggcgcGAACGGGCgGCuCCGGCGg -3'
miRNA:   3'- -UCGUCGa---------CUUGCUCGaCGuGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 94835 0.68 0.739656
Target:  5'- uGCGGCUGGACc-GCUGUGCCuGuCACg -3'
miRNA:   3'- uCGUCGACUUGcuCGACGUGGcC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 146662 0.68 0.729967
Target:  5'- gAGCcguuGCUGGACGAGgaGgACgucuCGGCGCu -3'
miRNA:   3'- -UCGu---CGACUUGCUCgaCgUG----GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 38436 0.68 0.729967
Target:  5'- uGGCGGC-GGGCcGGaCUGaggaGCCGGCGCg -3'
miRNA:   3'- -UCGUCGaCUUGcUC-GACg---UGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.