miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 8922 0.67 0.804411
Target:  5'- aAGCAGgUGGcCGuGC-GCACCuGCACg -3'
miRNA:   3'- -UCGUCgACUuGCuCGaCGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 9040 0.69 0.700439
Target:  5'- -cCGGCUGGACGAGaucaacgagGCGgUGGCGCa -3'
miRNA:   3'- ucGUCGACUUGCUCga-------CGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 9309 0.69 0.667382
Target:  5'- aAGCgacGGCggGAaagaggaaggaaacGCGGGUgcgUGCGCCGGCACg -3'
miRNA:   3'- -UCG---UCGa-CU--------------UGCUCG---ACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 12219 0.68 0.768136
Target:  5'- cGGCGGCgu--CG-GCgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCGacuuGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 12520 0.72 0.514415
Target:  5'- cGGCGGCUGggUGgauuggaaggaacgcGGCgcgcacgGCuACCGGCGCa -3'
miRNA:   3'- -UCGUCGACuuGC---------------UCGa------CG-UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 13279 0.66 0.830044
Target:  5'- cGGCcGCUGuuGACG-GCgGCAUgGGCGCu -3'
miRNA:   3'- -UCGuCGAC--UUGCuCGaCGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 14588 0.67 0.786545
Target:  5'- aAGCgGGCcGuGGCGAGC-GCGCCgGGCACc -3'
miRNA:   3'- -UCG-UCGaC-UUGCUCGaCGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 17822 0.66 0.838246
Target:  5'- uGCAGCUGuACGugaccacCUGCACCGaGcCGCu -3'
miRNA:   3'- uCGUCGACuUGCuc-----GACGUGGC-C-GUG- -5'
10761 3' -57.8 NC_002794.1 + 21916 0.66 0.869153
Target:  5'- uGGCGGCggaGACGA-CgGCGgCGGCGCg -3'
miRNA:   3'- -UCGUCGac-UUGCUcGaCGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 22911 0.66 0.861724
Target:  5'- cGGCGGC-GAccGCG-GCcGCcaaACCGGCACc -3'
miRNA:   3'- -UCGUCGaCU--UGCuCGaCG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 23916 0.72 0.529957
Target:  5'- cAGCAGCgUGGGCGAGCgaGCGauccgagcCCGGcCGCg -3'
miRNA:   3'- -UCGUCG-ACUUGCUCGa-CGU--------GGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 32859 0.7 0.66032
Target:  5'- cAGCGGCcGAgccgGCGGGCgGCGgCGGCGg -3'
miRNA:   3'- -UCGUCGaCU----UGCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 32920 0.66 0.838246
Target:  5'- cGGCAGCaGGucgGCGGGaaGCGCuCGGCGg -3'
miRNA:   3'- -UCGUCGaCU---UGCUCgaCGUG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 34846 0.67 0.813119
Target:  5'- gAGCgGGCgucgGAGCGGGCgccgcggGCGCCGcGgACg -3'
miRNA:   3'- -UCG-UCGa---CUUGCUCGa------CGUGGC-CgUG- -5'
10761 3' -57.8 NC_002794.1 + 35148 0.7 0.640094
Target:  5'- gGGCAGCUcgugucGAcCGAGgaGCACCGcGCGg -3'
miRNA:   3'- -UCGUCGA------CUuGCUCgaCGUGGC-CGUg -5'
10761 3' -57.8 NC_002794.1 + 36418 0.66 0.869153
Target:  5'- cGGCGGCUG-AUGaAGCggaagaccagGCGCCGGaGCu -3'
miRNA:   3'- -UCGUCGACuUGC-UCGa---------CGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 37748 0.72 0.539757
Target:  5'- cGGCGGCgGcGCG-GCgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCGaCuUGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 37883 0.66 0.854092
Target:  5'- gGGCGGCggGGGCGguGGCggcgGCAgCGGCuCg -3'
miRNA:   3'- -UCGUCGa-CUUGC--UCGa---CGUgGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 38149 0.68 0.748298
Target:  5'- gAGCAGgaGGuagGCGAgcaggcgGCUGCGCuCGGCGa -3'
miRNA:   3'- -UCGUCgaCU---UGCU-------CGACGUG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 38436 0.68 0.729967
Target:  5'- uGGCGGC-GGGCcGGaCUGaggaGCCGGCGCg -3'
miRNA:   3'- -UCGUCGaCUUGcUC-GACg---UGGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.