miRNA display CGI


Results 21 - 40 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 40642 0.67 0.820818
Target:  5'- cGCgAGCUGAGCGGGCaGCGacguacucggauuCCGGUc- -3'
miRNA:   3'- uCG-UCGACUUGCUCGaCGU-------------GGCCGug -5'
10761 3' -57.8 NC_002794.1 + 43215 0.69 0.690472
Target:  5'- uGCGGauugaUGAccACGAugcGCUGCAgCGGCACc -3'
miRNA:   3'- uCGUCg----ACU--UGCU---CGACGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 44429 0.69 0.690472
Target:  5'- gAGCGGCUcGACGA----CACCGGCGCg -3'
miRNA:   3'- -UCGUCGAcUUGCUcgacGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 46383 0.68 0.729967
Target:  5'- gGGCGcGCUacGACGAGCUGaaaCGGCACc -3'
miRNA:   3'- -UCGU-CGAc-UUGCUCGACgugGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 48020 0.66 0.859456
Target:  5'- cAGCAGCUucggcgucacgccgGAcgccgaguGCGuGCUGgGCaCGGCGCu -3'
miRNA:   3'- -UCGUCGA--------------CU--------UGCuCGACgUG-GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 49107 0.66 0.861724
Target:  5'- cGGC-GCUcGGCGucCUGCACCGGgACc -3'
miRNA:   3'- -UCGuCGAcUUGCucGACGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 49683 0.7 0.640094
Target:  5'- cGCaAGC-GGACGAGUcGCGUCGGCACg -3'
miRNA:   3'- uCG-UCGaCUUGCUCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 50588 0.73 0.472705
Target:  5'- cGGCGGCUGggUG-GCcgGCGCCGGgGg -3'
miRNA:   3'- -UCGUCGACuuGCuCGa-CGUGGCCgUg -5'
10761 3' -57.8 NC_002794.1 + 51882 0.67 0.821666
Target:  5'- cAGCAcgaUGAACaacAGCUGCACCcGCACc -3'
miRNA:   3'- -UCGUcg-ACUUGc--UCGACGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 52096 0.66 0.838246
Target:  5'- uGCuGCUGGcCGuGCUGCAgCuGCACc -3'
miRNA:   3'- uCGuCGACUuGCuCGACGUgGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 53279 0.66 0.869153
Target:  5'- gGGCGGC-GAGCGAccacuccaGgUGCcgagcggucgGCCGGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCU--------CgACG----------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 53770 0.66 0.854092
Target:  5'- cGGCGGCgGGACGcccGCgacGCGcCCGGCGg -3'
miRNA:   3'- -UCGUCGaCUUGCu--CGa--CGU-GGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 55169 0.66 0.830044
Target:  5'- gAGC-GCcGAGCGGGCgacucgagGCggcggcccuaacACCGGCGCg -3'
miRNA:   3'- -UCGuCGaCUUGCUCGa-------CG------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 55772 0.7 0.65931
Target:  5'- gAGCaggaagaAGCUGGcguuggccuccaGCGAGCgcaGCGCCgGGCGCg -3'
miRNA:   3'- -UCG-------UCGACU------------UGCUCGa--CGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 56096 0.72 0.510559
Target:  5'- cGCAGCacguGCGuGCUGCGCUGGCcCg -3'
miRNA:   3'- uCGUCGacu-UGCuCGACGUGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 56350 0.69 0.71035
Target:  5'- gAGCAGCUcGAagaggcggucgACGuGCUcgggaucCACCGGCACg -3'
miRNA:   3'- -UCGUCGA-CU-----------UGCuCGAc------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 58072 0.81 0.15304
Target:  5'- cGGCGGCgGGACGGGCgGC-CCGGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCUCGaCGuGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 58647 0.8 0.177932
Target:  5'- cGCAGCUGGgcgACGGGCUGCugcaGCCGGC-Cg -3'
miRNA:   3'- uCGUCGACU---UGCUCGACG----UGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 58773 0.71 0.599628
Target:  5'- cGCuGCUGGccuacgucaGCGcGCUGCacgACCGGCGCc -3'
miRNA:   3'- uCGuCGACU---------UGCuCGACG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 59514 0.69 0.680457
Target:  5'- cGGCGGCUu--CccGCUGCACCcGGCGCu -3'
miRNA:   3'- -UCGUCGAcuuGcuCGACGUGG-CCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.