miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 60618 0.74 0.410114
Target:  5'- cAGCAGaaccGGACGGGCggacccgGCGCCGGCGg -3'
miRNA:   3'- -UCGUCga--CUUGCUCGa------CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 62327 0.69 0.680457
Target:  5'- cGCcccucGCUGGcgGAGCccGCGCCGGCGCa -3'
miRNA:   3'- uCGu----CGACUugCUCGa-CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 62489 0.66 0.861724
Target:  5'- gAGC-GCgagugGAcgGCGGGCgGCgccGCCGGCGCc -3'
miRNA:   3'- -UCGuCGa----CU--UGCUCGaCG---UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 63686 0.67 0.821666
Target:  5'- cGCGGCgacGAcgaugACGAcGacgGCGCCGGCGCc -3'
miRNA:   3'- uCGUCGa--CU-----UGCU-Cga-CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 64800 0.69 0.71035
Target:  5'- cGCGGC-GAGCGAcGCcGCggacggcggcgaGCCGGCGCc -3'
miRNA:   3'- uCGUCGaCUUGCU-CGaCG------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 65944 0.67 0.795551
Target:  5'- cGGCGGCgGuaucgucGCGAGCgGCGgcgucuccuCCGGCACc -3'
miRNA:   3'- -UCGUCGaCu------UGCUCGaCGU---------GGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 68265 0.67 0.813119
Target:  5'- uGCAGCUGuucGACGAGCaccggGCcaGCCGG-GCg -3'
miRNA:   3'- uCGUCGAC---UUGCUCGa----CG--UGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 68924 0.7 0.620855
Target:  5'- cGCGGCguccucgucgcccGCGGGCcgcgGCGCCGGCGCc -3'
miRNA:   3'- uCGUCGacu----------UGCUCGa---CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 69698 0.7 0.66032
Target:  5'- cAGCGGCgucACGcaCUGCAUCGGCACc -3'
miRNA:   3'- -UCGUCGacuUGCucGACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 72210 0.66 0.849419
Target:  5'- cGCAGC-GGGC--GCUGUcggaagaacacgaugGCCGGCACg -3'
miRNA:   3'- uCGUCGaCUUGcuCGACG---------------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 72336 0.68 0.749253
Target:  5'- uGCAGUcGGugGAgccgguggcGCUGCACCGucuGCGCg -3'
miRNA:   3'- uCGUCGaCUugCU---------CGACGUGGC---CGUG- -5'
10761 3' -57.8 NC_002794.1 + 73071 0.71 0.559534
Target:  5'- uGGCAGgaGGACGGGC-GCACCGuCAa -3'
miRNA:   3'- -UCGUCgaCUUGCUCGaCGUGGCcGUg -5'
10761 3' -57.8 NC_002794.1 + 76832 0.66 0.861724
Target:  5'- cAGCGGCc-GGCGAuGC-GCGCCGGCc- -3'
miRNA:   3'- -UCGUCGacUUGCU-CGaCGUGGCCGug -5'
10761 3' -57.8 NC_002794.1 + 77326 0.67 0.795551
Target:  5'- uGCccCUGGGCaucGAGCUGCACCucccggaggGGCACu -3'
miRNA:   3'- uCGucGACUUG---CUCGACGUGG---------CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 79435 0.7 0.650214
Target:  5'- cGGCGGCg--GCG-GCgGCgACCGGCGCg -3'
miRNA:   3'- -UCGUCGacuUGCuCGaCG-UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 80461 0.66 0.830872
Target:  5'- cGGCGgcccGCUGcccgucuuccgcguCGAGCUGgcgcacCACCGGCACg -3'
miRNA:   3'- -UCGU----CGACuu------------GCUCGAC------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 80521 0.73 0.445265
Target:  5'- cGCGGCgc-GCGAcGCcugGCACCGGCGCc -3'
miRNA:   3'- uCGUCGacuUGCU-CGa--CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 81544 0.69 0.71035
Target:  5'- gAGC-GCUGGACG-GCUGCcGCCGcCGCc -3'
miRNA:   3'- -UCGuCGACUUGCuCGACG-UGGCcGUG- -5'
10761 3' -57.8 NC_002794.1 + 83051 0.67 0.795551
Target:  5'- cGGCGGa-GGACGAGCgcccaccCACgGGCGCa -3'
miRNA:   3'- -UCGUCgaCUUGCUCGac-----GUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 84023 0.67 0.795551
Target:  5'- gGGCacgAGCgacGCGAGCgGCACgaaCGGCACg -3'
miRNA:   3'- -UCG---UCGacuUGCUCGaCGUG---GCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.