miRNA display CGI


Results 61 - 80 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 84282 0.79 0.211458
Target:  5'- cGCAGCUGccGACGGGgaGCGgCGGCGCu -3'
miRNA:   3'- uCGUCGAC--UUGCUCgaCGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 84518 0.68 0.749253
Target:  5'- uGUAGCgaaGACGAGCUGUAacgcaCGcGCACg -3'
miRNA:   3'- uCGUCGac-UUGCUCGACGUg----GC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 86956 0.69 0.679454
Target:  5'- gAGCGucgacguccGCUGcGGCGAGCUGCGacgagguCCGGCGg -3'
miRNA:   3'- -UCGU---------CGAC-UUGCUCGACGU-------GGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 89390 0.69 0.720195
Target:  5'- gAGCGGUcgcggUGAGgucCGuGgaGCGCCGGCGCc -3'
miRNA:   3'- -UCGUCG-----ACUU---GCuCgaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 90331 0.72 0.500971
Target:  5'- cGCAGCUGGugGccgucGGCcugugcguccugUGCACCGuGCGCg -3'
miRNA:   3'- uCGUCGACUugC-----UCG------------ACGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 90435 0.66 0.853318
Target:  5'- uGGCcGCUGAucaucugagGCGAGCUuuucggcgaggccGCGCgCGGCGg -3'
miRNA:   3'- -UCGuCGACU---------UGCUCGA-------------CGUG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 91238 0.67 0.813119
Target:  5'- cGGCGGCcGu-CGGGCUGCGCucgCGGaCGCc -3'
miRNA:   3'- -UCGUCGaCuuGCUCGACGUG---GCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 91651 0.68 0.768136
Target:  5'- --gAGCUGA---AGCUGCACCugucGGCGCa -3'
miRNA:   3'- ucgUCGACUugcUCGACGUGG----CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 91761 0.68 0.729967
Target:  5'- gGGCGGCaccgcgcaGGACGGGCUGCugaaGgCGGUGCa -3'
miRNA:   3'- -UCGUCGa-------CUUGCUCGACG----UgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94011 0.69 0.680457
Target:  5'- cGGCGGCgGGccgGCGGGUUcCGCCGGCGg -3'
miRNA:   3'- -UCGUCGaCU---UGCUCGAcGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 94064 0.71 0.599628
Target:  5'- gGGCGGCgggGGGCGAGg-GCACCuacgaccugucGGCGCu -3'
miRNA:   3'- -UCGUCGa--CUUGCUCgaCGUGG-----------CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94222 0.69 0.71035
Target:  5'- uGGCGGCgacGGGCGGGC-GgGCCGGUgACg -3'
miRNA:   3'- -UCGUCGa--CUUGCUCGaCgUGGCCG-UG- -5'
10761 3' -57.8 NC_002794.1 + 94779 0.7 0.650214
Target:  5'- aGGC-GCUGGGCGAGUUcgAgCGGCACg -3'
miRNA:   3'- -UCGuCGACUUGCUCGAcgUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 94835 0.68 0.739656
Target:  5'- uGCGGCUGGACc-GCUGUGCCuGuCACg -3'
miRNA:   3'- uCGUCGACUUGcuCGACGUGGcC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 95824 0.7 0.640094
Target:  5'- cGGCGGCcGGGgGAGCgGCGgCGGCGg -3'
miRNA:   3'- -UCGUCGaCUUgCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 96377 0.66 0.830044
Target:  5'- cGUGGCgccGAGCGAGUggaugGUcgcgccuuACCGGCGCu -3'
miRNA:   3'- uCGUCGa--CUUGCUCGa----CG--------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 96897 0.66 0.846264
Target:  5'- gGGCAgGCgucGGGCGgagguGGCggagGCGCCGGCGa -3'
miRNA:   3'- -UCGU-CGa--CUUGC-----UCGa---CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 98905 0.69 0.689472
Target:  5'- cGCGGUcucgacgacuucaUGAGCGGGCUGgGCgCGGC-Cg -3'
miRNA:   3'- uCGUCG-------------ACUUGCUCGACgUG-GCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 99784 0.68 0.75875
Target:  5'- uGcCGGCgucGAcuACGAGCgcgcgccgcggGCGCCGGCGCc -3'
miRNA:   3'- uC-GUCGa--CU--UGCUCGa----------CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 100391 0.77 0.288079
Target:  5'- cGCGGCgUGGACGAcguggcguggccGCUGUACCGGUGCc -3'
miRNA:   3'- uCGUCG-ACUUGCU------------CGACGUGGCCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.