miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 194958 0.69 0.670404
Target:  5'- cAGCAGCggcacGAACGccGGCUcguacaggcacaGCGCCGcGCGCa -3'
miRNA:   3'- -UCGUCGa----CUUGC--UCGA------------CGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 194649 0.66 0.838246
Target:  5'- cAGCAcCUGcguCG-GCUGCGCCGGguCc -3'
miRNA:   3'- -UCGUcGACuu-GCuCGACGUGGCCguG- -5'
10761 3' -57.8 NC_002794.1 + 194149 0.72 0.500971
Target:  5'- cAGCAGCgcccGCGAGCccUGCCGGCGCg -3'
miRNA:   3'- -UCGUCGacu-UGCUCGacGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 193821 0.67 0.813119
Target:  5'- uGGC-GCcGAcGCGucGCgGCGCCGGCACu -3'
miRNA:   3'- -UCGuCGaCU-UGCu-CGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 193745 0.68 0.749253
Target:  5'- cGCGGCUucGGCGAGCgacCGCCGGCc- -3'
miRNA:   3'- uCGUCGAc-UUGCUCGac-GUGGCCGug -5'
10761 3' -57.8 NC_002794.1 + 193271 0.69 0.690472
Target:  5'- cAGCAGCaacAGCG-GCgUGCGCCGGUAg -3'
miRNA:   3'- -UCGUCGac-UUGCuCG-ACGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 192945 0.7 0.629968
Target:  5'- cAGCAGCUGcgcagacaggccGACGAGCcgUGCaggACCagGGCGCg -3'
miRNA:   3'- -UCGUCGAC------------UUGCUCG--ACG---UGG--CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 192133 0.69 0.720195
Target:  5'- uGCuGCUGuu---GCUGCuGCCGGCGCg -3'
miRNA:   3'- uCGuCGACuugcuCGACG-UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 191886 0.7 0.619843
Target:  5'- gGGCGGCgGAgGCGGGaucgGCACCGGgACc -3'
miRNA:   3'- -UCGUCGaCU-UGCUCga--CGUGGCCgUG- -5'
10761 3' -57.8 NC_002794.1 + 189657 0.66 0.830044
Target:  5'- uAGcCGGCUGGcCGAGCggucGCcCCGGC-Cg -3'
miRNA:   3'- -UC-GUCGACUuGCUCGa---CGuGGCCGuG- -5'
10761 3' -57.8 NC_002794.1 + 184926 0.71 0.568501
Target:  5'- cGGCAGCc-GGCGgucguccugccgcAGCUGCGCCGGCccGCg -3'
miRNA:   3'- -UCGUCGacUUGC-------------UCGACGUGGCCG--UG- -5'
10761 3' -57.8 NC_002794.1 + 184506 0.7 0.640094
Target:  5'- gGGCGGC---GCGGGCcccGCGCgCGGCGCg -3'
miRNA:   3'- -UCGUCGacuUGCUCGa--CGUG-GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 184091 0.7 0.66032
Target:  5'- uAGCGGCaGAACG-GCgaacGCGCCaGCGCc -3'
miRNA:   3'- -UCGUCGaCUUGCuCGa---CGUGGcCGUG- -5'
10761 3' -57.8 NC_002794.1 + 183425 0.69 0.700439
Target:  5'- aAGCGGgaGcGgGAGCgGgACCGGCGCc -3'
miRNA:   3'- -UCGUCgaCuUgCUCGaCgUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 182539 0.66 0.846264
Target:  5'- cGCGGC--AGCGA-CUGCgccgcgGCCGGCACc -3'
miRNA:   3'- uCGUCGacUUGCUcGACG------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 182176 0.71 0.549618
Target:  5'- gAGCGGCUGuaccauAACgGGGCcucgGCGCCGGCGu -3'
miRNA:   3'- -UCGUCGAC------UUG-CUCGa---CGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 181221 0.66 0.846264
Target:  5'- aAGCAGC--GACGAGauccgGCGaCGGCGCg -3'
miRNA:   3'- -UCGUCGacUUGCUCga---CGUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 179612 0.7 0.66032
Target:  5'- gAGCGGCgcGAGCGA-CUGC-CgGGCGCu -3'
miRNA:   3'- -UCGUCGa-CUUGCUcGACGuGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 152730 0.67 0.777405
Target:  5'- cAGCAGCU---CGAGUUGUGCCaGCAg -3'
miRNA:   3'- -UCGUCGAcuuGCUCGACGUGGcCGUg -5'
10761 3' -57.8 NC_002794.1 + 150212 0.74 0.410114
Target:  5'- gAGCGGCUGcugcCGAGCUGCGugcgaCGGCAg -3'
miRNA:   3'- -UCGUCGACuu--GCUCGACGUg----GCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.