miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 149465 0.66 0.869153
Target:  5'- gGGCGGUcgagGAGCGAGggGgGgCGGCAUg -3'
miRNA:   3'- -UCGUCGa---CUUGCUCgaCgUgGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 147434 0.66 0.861724
Target:  5'- uGCuGCUGGACG-GCU--ACgGGCGCg -3'
miRNA:   3'- uCGuCGACUUGCuCGAcgUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 146662 0.68 0.729967
Target:  5'- gAGCcguuGCUGGACGAGgaGgACgucuCGGCGCu -3'
miRNA:   3'- -UCGu---CGACUUGCUCgaCgUG----GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 146303 0.67 0.821666
Target:  5'- cGCAGgUGuuGACGGGCU-CGCCGacGCGCg -3'
miRNA:   3'- uCGUCgAC--UUGCUCGAcGUGGC--CGUG- -5'
10761 3' -57.8 NC_002794.1 + 145728 0.73 0.463462
Target:  5'- gGGC-GCUGGAgGcGGCgGCGCCGGCAUc -3'
miRNA:   3'- -UCGuCGACUUgC-UCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 145282 0.66 0.869153
Target:  5'- uGGCAGgcCUGAccuCGAccccGCUGUcguauuaaACCGGCGCg -3'
miRNA:   3'- -UCGUC--GACUu--GCU----CGACG--------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 144883 0.66 0.846264
Target:  5'- cGGguGCgGGGCGAgacgcucgcgccGCUGggccccgcCGCCGGCACc -3'
miRNA:   3'- -UCguCGaCUUGCU------------CGAC--------GUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 144414 0.66 0.861724
Target:  5'- cGCugGGCccGAGCGcccuGCUGCGCCGaGUGCa -3'
miRNA:   3'- uCG--UCGa-CUUGCu---CGACGUGGC-CGUG- -5'
10761 3' -57.8 NC_002794.1 + 144219 0.66 0.869153
Target:  5'- cGCAGCUGGucaucAUGcGCUaCAUgGGCACg -3'
miRNA:   3'- uCGUCGACU-----UGCuCGAcGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 142476 0.67 0.777405
Target:  5'- cGGCAcCgUGGACGcguGCgGCGCCGGCAg -3'
miRNA:   3'- -UCGUcG-ACUUGCu--CGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 142406 0.67 0.821666
Target:  5'- aGGCGGCgu--CG-GCgGCGCCgGGCGCg -3'
miRNA:   3'- -UCGUCGacuuGCuCGaCGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 142181 0.67 0.813119
Target:  5'- cGGCAGCgcgagGAGCGgcagugcgggaAGCgGCGgCGGCAg -3'
miRNA:   3'- -UCGUCGa----CUUGC-----------UCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 141526 0.69 0.720195
Target:  5'- cGC--CUGGGCGGGCUGCucGCCgaaGGCGCg -3'
miRNA:   3'- uCGucGACUUGCUCGACG--UGG---CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 141429 0.66 0.854092
Target:  5'- gGGCGGCggGGGCGccGGggGCGCCGGgaGCg -3'
miRNA:   3'- -UCGUCGa-CUUGC--UCgaCGUGGCCg-UG- -5'
10761 3' -57.8 NC_002794.1 + 139010 0.68 0.75875
Target:  5'- uGCGGCUGAA-GAGCUcGC-CgCGGCGa -3'
miRNA:   3'- uCGUCGACUUgCUCGA-CGuG-GCCGUg -5'
10761 3' -57.8 NC_002794.1 + 138969 0.66 0.861724
Target:  5'- cGCGGC-GGACGGGUUGgC-CUGGCGg -3'
miRNA:   3'- uCGUCGaCUUGCUCGAC-GuGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 135707 0.7 0.640094
Target:  5'- aGGUAGCgcu-CGAGCUGCugCGuaGCa -3'
miRNA:   3'- -UCGUCGacuuGCUCGACGugGCcgUG- -5'
10761 3' -57.8 NC_002794.1 + 129219 0.68 0.739656
Target:  5'- cGGCGGUggauaggcgcGAACGGGCgGCuCCGGCGg -3'
miRNA:   3'- -UCGUCGa---------CUUGCUCGaCGuGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 127128 0.69 0.700439
Target:  5'- gAGCcGCUGAugGAGaCgaacgGCGCgGGCGa -3'
miRNA:   3'- -UCGuCGACUugCUC-Ga----CGUGgCCGUg -5'
10761 3' -57.8 NC_002794.1 + 126265 0.7 0.609727
Target:  5'- cGGCGGCUGGcugGCGGcGCugggcuugcugUGCGCCGcGCGCc -3'
miRNA:   3'- -UCGUCGACU---UGCU-CG-----------ACGUGGC-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.