miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10761 3' -57.8 NC_002794.1 + 125985 0.7 0.629968
Target:  5'- uGCAGCUGGccACGcAGCaGCucCUGGCGCu -3'
miRNA:   3'- uCGUCGACU--UGC-UCGaCGu-GGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 125663 0.7 0.66032
Target:  5'- cGGCGcGCUGAACGGGCUcugGCugACgGGCGa -3'
miRNA:   3'- -UCGU-CGACUUGCUCGA---CG--UGgCCGUg -5'
10761 3' -57.8 NC_002794.1 + 125532 0.74 0.436318
Target:  5'- cGCGGC-GAACGAGC-GCGgCGGCAg -3'
miRNA:   3'- uCGUCGaCUUGCUCGaCGUgGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 123663 0.66 0.844676
Target:  5'- cGCAGCUGGugucgcucggccCGGGCUGggaGCaGGCGCg -3'
miRNA:   3'- uCGUCGACUu-----------GCUCGACg--UGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 123452 0.73 0.454314
Target:  5'- gAGCGGCUGGcCGAGCaccUGUACUacgaGGCGCu -3'
miRNA:   3'- -UCGUCGACUuGCUCG---ACGUGG----CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 123333 0.68 0.749253
Target:  5'- cGCAGCUGGGgGuGGCguuccaacgGUACCGGcCGCu -3'
miRNA:   3'- uCGUCGACUUgC-UCGa--------CGUGGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 122887 0.7 0.629968
Target:  5'- cGCcgAGCUcAACGAGC-GCACgGGCGCc -3'
miRNA:   3'- uCG--UCGAcUUGCUCGaCGUGgCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 122665 0.67 0.777405
Target:  5'- uGGCGGCgcaGGcCcGGCUGUGCCGGuCGCg -3'
miRNA:   3'- -UCGUCGa--CUuGcUCGACGUGGCC-GUG- -5'
10761 3' -57.8 NC_002794.1 + 122554 0.69 0.720195
Target:  5'- uGUGGCUGGACGAGaacgcGCAgCGGCuGCu -3'
miRNA:   3'- uCGUCGACUUGCUCga---CGUgGCCG-UG- -5'
10761 3' -57.8 NC_002794.1 + 122485 0.72 0.520222
Target:  5'- aGGCcgGGCUGAACGAGUcgGCGCC-GCAg -3'
miRNA:   3'- -UCG--UCGACUUGCUCGa-CGUGGcCGUg -5'
10761 3' -57.8 NC_002794.1 + 119708 0.66 0.854092
Target:  5'- cGGCGGCcacAACGgcGGCUucgGCACCgGGCGCu -3'
miRNA:   3'- -UCGUCGac-UUGC--UCGA---CGUGG-CCGUG- -5'
10761 3' -57.8 NC_002794.1 + 118695 0.71 0.583522
Target:  5'- cGGCAGCgcccagGAGCGcaugauggccAGCUGCGCguacugggcgcugcuCGGCGCg -3'
miRNA:   3'- -UCGUCGa-----CUUGC----------UCGACGUG---------------GCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 118261 0.69 0.700439
Target:  5'- aGGuCGGCcgGGGCG-GCgGCGCCGGCGu -3'
miRNA:   3'- -UC-GUCGa-CUUGCuCGaCGUGGCCGUg -5'
10761 3' -57.8 NC_002794.1 + 117840 0.66 0.838246
Target:  5'- gAGCAGCgGcACgGAGCgcgacggGgGCUGGCGCg -3'
miRNA:   3'- -UCGUCGaCuUG-CUCGa------CgUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 117511 0.68 0.75875
Target:  5'- cAGguGCUGGG-----UGCGCCGGCGCa -3'
miRNA:   3'- -UCguCGACUUgcucgACGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 116864 0.66 0.830044
Target:  5'- cGGCGGCcGuguCGcGCUcgucagggggGCGCCGGCGCc -3'
miRNA:   3'- -UCGUCGaCuu-GCuCGA----------CGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 115569 0.71 0.566505
Target:  5'- gAGCAGCUcggcGAACGggacguagcGGCUGCGgucgacccgcucgcCCGGCGCc -3'
miRNA:   3'- -UCGUCGA----CUUGC---------UCGACGU--------------GGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 114727 0.66 0.829214
Target:  5'- cGGCGGCUccgGGuucguCGAGCcgGCgccgcccGCCGGCGCc -3'
miRNA:   3'- -UCGUCGA---CUu----GCUCGa-CG-------UGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 114656 0.7 0.650214
Target:  5'- cGguGCUGuucGCGcGC-GCGCCGGUACu -3'
miRNA:   3'- uCguCGACu--UGCuCGaCGUGGCCGUG- -5'
10761 3' -57.8 NC_002794.1 + 114532 0.75 0.356051
Target:  5'- cGGCAGCcGcGCGAGCUGCgcgagcuguucuucgGCCaGGCGCa -3'
miRNA:   3'- -UCGUCGaCuUGCUCGACG---------------UGG-CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.