miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 152050 0.66 0.786879
Target:  5'- uUCGCGA--CCGCgGCCGGCaaauaccggauccgaGGAcUGCu -3'
miRNA:   3'- -GGCGCUucGGCGgCGGCCG---------------CCUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 37885 0.66 0.783454
Target:  5'- gCgGCGggGgCGgUGgCGGCGGcAGCGg -3'
miRNA:   3'- -GgCGCuuCgGCgGCgGCCGCC-UUGCg -5'
10763 3' -61.7 NC_002794.1 + 50720 0.66 0.783454
Target:  5'- cUCGCGu--UCGCCGCCcggGGCGGc-CGCc -3'
miRNA:   3'- -GGCGCuucGGCGGCGG---CCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 147042 0.66 0.783454
Target:  5'- ---nGAAGCCGUCGgCGGCcggucuaaggacGGAGcCGCg -3'
miRNA:   3'- ggcgCUUCGGCGGCgGCCG------------CCUU-GCG- -5'
10763 3' -61.7 NC_002794.1 + 108395 0.66 0.783454
Target:  5'- -aGCGGAGgCuCCGgCGGCGGcgcccaccacGGCGCc -3'
miRNA:   3'- ggCGCUUCgGcGGCgGCCGCC----------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 105660 0.66 0.783454
Target:  5'- gCCGCGgcGCgCuCCGcCCGGaccgccgGGAACGUc -3'
miRNA:   3'- -GGCGCuuCG-GcGGC-GGCCg------CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 82936 0.66 0.783454
Target:  5'- gCCGCuccGAcuccaGGcCCGCCGCgcaCGGCGcGcACGCg -3'
miRNA:   3'- -GGCG---CU-----UC-GGCGGCG---GCCGC-CuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 183444 0.66 0.783454
Target:  5'- aCCgGCGcccGCCaCCGCCGGCGcc-CGCc -3'
miRNA:   3'- -GG-CGCuu-CGGcGGCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 71055 0.66 0.783454
Target:  5'- cCCG-GAAGCCGCCGCC-GCa----GCa -3'
miRNA:   3'- -GGCgCUUCGGCGGCGGcCGccuugCG- -5'
10763 3' -61.7 NC_002794.1 + 86824 0.66 0.783454
Target:  5'- gCCGCGAccUCGCCgggaucggGUCGGCGGcccCGCc -3'
miRNA:   3'- -GGCGCUucGGCGG--------CGGCCGCCuu-GCG- -5'
10763 3' -61.7 NC_002794.1 + 19883 0.66 0.783454
Target:  5'- cCUGCGuGGCCGaCCGCUGcCGcGAGCa- -3'
miRNA:   3'- -GGCGCuUCGGC-GGCGGCcGC-CUUGcg -5'
10763 3' -61.7 NC_002794.1 + 145874 0.66 0.783454
Target:  5'- gCCGCGAccGGaCCGCgaGaagCGGC-GAGCGCg -3'
miRNA:   3'- -GGCGCU--UC-GGCGg-Cg--GCCGcCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 111310 0.66 0.783454
Target:  5'- cCCGaCGGAGaCGCCggGCCaGCGGcGCGg -3'
miRNA:   3'- -GGC-GCUUCgGCGG--CGGcCGCCuUGCg -5'
10763 3' -61.7 NC_002794.1 + 139552 0.66 0.782595
Target:  5'- gUGCGGugguagauccggcGGCUGCUGuuuuguuuCCGGCGGuggauGACGCg -3'
miRNA:   3'- gGCGCU-------------UCGGCGGC--------GGCCGCC-----UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 35038 0.66 0.782595
Target:  5'- uCCGCGGgcugauGGagguccaccaugaCCGCCGCUGcGUGG-GCGCc -3'
miRNA:   3'- -GGCGCU------UC-------------GGCGGCGGC-CGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187757 0.66 0.778281
Target:  5'- uCCGaaCGccGCCGgCGCCGGUcgccucgaccccggaGGAACGg -3'
miRNA:   3'- -GGC--GCuuCGGCgGCGGCCG---------------CCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 84984 0.66 0.774809
Target:  5'- gCCGCGAaaccccacgAGcCCGaCCGCCGcGCucGggUGCc -3'
miRNA:   3'- -GGCGCU---------UC-GGC-GGCGGC-CGc-CuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 138756 0.66 0.774809
Target:  5'- uCCG-GggGCCgagucgcgGCgGUCGGUGGAggggaggggucACGCa -3'
miRNA:   3'- -GGCgCuuCGG--------CGgCGGCCGCCU-----------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 126122 0.66 0.774809
Target:  5'- gCCGCGcucGUcugCGCCgguuucugGCCGGCccucuGGGACGCg -3'
miRNA:   3'- -GGCGCuu-CG---GCGG--------CGGCCG-----CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 115866 0.66 0.774809
Target:  5'- nCGCGAGGgguccggggcguCCGgggCGUCcGCGGAGCGCg -3'
miRNA:   3'- gGCGCUUC------------GGCg--GCGGcCGCCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.