Results 41 - 60 of 587 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10763 | 3' | -61.7 | NC_002794.1 | + | 71055 | 0.66 | 0.783454 |
Target: 5'- cCCG-GAAGCCGCCGCC-GCa----GCa -3' miRNA: 3'- -GGCgCUUCGGCGGCGGcCGccuugCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 86824 | 0.66 | 0.783454 |
Target: 5'- gCCGCGAccUCGCCgggaucggGUCGGCGGcccCGCc -3' miRNA: 3'- -GGCGCUucGGCGG--------CGGCCGCCuu-GCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 19883 | 0.66 | 0.783454 |
Target: 5'- cCUGCGuGGCCGaCCGCUGcCGcGAGCa- -3' miRNA: 3'- -GGCGCuUCGGC-GGCGGCcGC-CUUGcg -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 145874 | 0.66 | 0.783454 |
Target: 5'- gCCGCGAccGGaCCGCgaGaagCGGC-GAGCGCg -3' miRNA: 3'- -GGCGCU--UC-GGCGg-Cg--GCCGcCUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 111310 | 0.66 | 0.783454 |
Target: 5'- cCCGaCGGAGaCGCCggGCCaGCGGcGCGg -3' miRNA: 3'- -GGC-GCUUCgGCGG--CGGcCGCCuUGCg -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 139552 | 0.66 | 0.782595 |
Target: 5'- gUGCGGugguagauccggcGGCUGCUGuuuuguuuCCGGCGGuggauGACGCg -3' miRNA: 3'- gGCGCU-------------UCGGCGGC--------GGCCGCC-----UUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 89380 | 0.66 | 0.774809 |
Target: 5'- gCCGUuucgGGAGCgGUCGCgGugagguccGUGGAGCGCc -3' miRNA: 3'- -GGCG----CUUCGgCGGCGgC--------CGCCUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 104447 | 0.66 | 0.774809 |
Target: 5'- gCCGCG-GGCgGCCcgaGCCcgGGCGGcgUGUg -3' miRNA: 3'- -GGCGCuUCGgCGG---CGG--CCGCCuuGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 128874 | 0.66 | 0.774809 |
Target: 5'- gCCGUGAcccuuuGCCGCUGUaCGGagcucGAGCGCu -3' miRNA: 3'- -GGCGCUu-----CGGCGGCG-GCCgc---CUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 133991 | 0.66 | 0.774809 |
Target: 5'- cUCGaaGAGGUCgGUCGCCGGgUGcGAGCGCu -3' miRNA: 3'- -GGCg-CUUCGG-CGGCGGCC-GC-CUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 19315 | 0.66 | 0.774809 |
Target: 5'- aCCGCccacGCCG-CGCUGGCGacccGCGCg -3' miRNA: 3'- -GGCGcuu-CGGCgGCGGCCGCcu--UGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 76538 | 0.66 | 0.774809 |
Target: 5'- gCCGCGGcgccgacgcGGUCGCgCGCCGGguacucaccCGGccCGCc -3' miRNA: 3'- -GGCGCU---------UCGGCG-GCGGCC---------GCCuuGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 57502 | 0.66 | 0.774809 |
Target: 5'- gCGCGcccGCCGCCuaCGGCGaGuuCGUg -3' miRNA: 3'- gGCGCuu-CGGCGGcgGCCGC-CuuGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 20179 | 0.66 | 0.774809 |
Target: 5'- aCCGCGAgAGcCCGCCGCCcaaccuGCu--ACGCc -3' miRNA: 3'- -GGCGCU-UC-GGCGGCGGc-----CGccuUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 116130 | 0.66 | 0.774809 |
Target: 5'- gCCGCGgcGgCGgCGgCGGCGGccAGgGCc -3' miRNA: 3'- -GGCGCuuCgGCgGCgGCCGCC--UUgCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 115866 | 0.66 | 0.774809 |
Target: 5'- nCGCGAGGgguccggggcguCCGgggCGUCcGCGGAGCGCg -3' miRNA: 3'- gGCGCUUC------------GGCg--GCGGcCGCCUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 126122 | 0.66 | 0.774809 |
Target: 5'- gCCGCGcucGUcugCGCCgguuucugGCCGGCccucuGGGACGCg -3' miRNA: 3'- -GGCGCuu-CG---GCGG--------CGGCCG-----CCUUGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 138756 | 0.66 | 0.774809 |
Target: 5'- uCCG-GggGCCgagucgcgGCgGUCGGUGGAggggaggggucACGCa -3' miRNA: 3'- -GGCgCuuCGG--------CGgCGGCCGCCU-----------UGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 84984 | 0.66 | 0.774809 |
Target: 5'- gCCGCGAaaccccacgAGcCCGaCCGCCGcGCucGggUGCc -3' miRNA: 3'- -GGCGCU---------UC-GGC-GGCGGC-CGc-CuuGCG- -5' |
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10763 | 3' | -61.7 | NC_002794.1 | + | 187757 | 0.66 | 0.778281 |
Target: 5'- uCCGaaCGccGCCGgCGCCGGUcgccucgaccccggaGGAACGg -3' miRNA: 3'- -GGC--GCuuCGGCgGCGGCCG---------------CCUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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