miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 103996 1.11 0.00105
Target:  5'- gCCGCGAAGCCGCCGCCGGCGGAACGCc -3'
miRNA:   3'- -GGCGCUUCGGCGGCGGCCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 118670 0.93 0.019418
Target:  5'- gCGCGAcgcccgcGGCCGCCGCCGGCGGcAGCGCc -3'
miRNA:   3'- gGCGCU-------UCGGCGGCGGCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 137595 0.92 0.023295
Target:  5'- gCGgGGAGCCGCCGCCGGCGGu-CGCg -3'
miRNA:   3'- gGCgCUUCGGCGGCGGCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 80429 0.9 0.028585
Target:  5'- -gGCGggGCCGCCGCCGGCGGc-CGCc -3'
miRNA:   3'- ggCGCuuCGGCGGCGGCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 37728 0.89 0.035055
Target:  5'- cCCGCGAgcGGCggCGCCGCCGGCGGcGGCGCg -3'
miRNA:   3'- -GGCGCU--UCG--GCGGCGGCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 145806 0.86 0.059496
Target:  5'- aCGaCGAcGCCGCCGCCGGCGGcgagccgAGCGCg -3'
miRNA:   3'- gGC-GCUuCGGCGGCGGCCGCC-------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 58013 0.85 0.06431
Target:  5'- gCCGcCGggGCCGCCGCCGGCGaaccCGCc -3'
miRNA:   3'- -GGC-GCuuCGGCGGCGGCCGCcuu-GCG- -5'
10763 3' -61.7 NC_002794.1 + 47403 0.85 0.069325
Target:  5'- gCC-CGAAGCCGCCGUCGGCgccgucgcgcGGAGCGCc -3'
miRNA:   3'- -GGcGCUUCGGCGGCGGCCG----------CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 112246 0.85 0.07108
Target:  5'- gCCGCGAA--CGCCGCCGGCGGGACcgGCg -3'
miRNA:   3'- -GGCGCUUcgGCGGCGGCCGCCUUG--CG- -5'
10763 3' -61.7 NC_002794.1 + 34246 0.85 0.07108
Target:  5'- aCGCGcGGCUGCCGCCgcaGGCGGAccGCGCg -3'
miRNA:   3'- gGCGCuUCGGCGGCGG---CCGCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 105496 0.84 0.072876
Target:  5'- gUCGUGGAGCCGCCGCCGcCGGucGCGCc -3'
miRNA:   3'- -GGCGCUUCGGCGGCGGCcGCCu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 111626 0.84 0.080509
Target:  5'- gCCGcCGcGGCCGCCGCCGGUcGGGCGCc -3'
miRNA:   3'- -GGC-GCuUCGGCGGCGGCCGcCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 53756 0.84 0.080509
Target:  5'- gCCGcCGccGCUGCCGgCGGCGGGACGCc -3'
miRNA:   3'- -GGC-GCuuCGGCGGCgGCCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 119529 0.84 0.082328
Target:  5'- gCCGCGGaccccucguccgcGGCCGUCGCCGGCcacgugucccGGAGCGCc -3'
miRNA:   3'- -GGCGCU-------------UCGGCGGCGGCCG----------CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 44531 0.83 0.093403
Target:  5'- uCCGCGAGcgcgccgucGUCGUCGCCGGCGGcGGCGCc -3'
miRNA:   3'- -GGCGCUU---------CGGCGGCGGCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 188327 0.81 0.116461
Target:  5'- uCCuCGucGCCGCCGCCGGCGGcgccguCGCg -3'
miRNA:   3'- -GGcGCuuCGGCGGCGGCCGCCuu----GCG- -5'
10763 3' -61.7 NC_002794.1 + 65757 0.81 0.119329
Target:  5'- cCCGCGccGCCGCCGCCcguGGUGGGGCcgaGCg -3'
miRNA:   3'- -GGCGCuuCGGCGGCGG---CCGCCUUG---CG- -5'
10763 3' -61.7 NC_002794.1 + 105906 0.81 0.127096
Target:  5'- gCCGCGGcggcggcgcuaccGCCGCCGCCGGaCGGGcuggACGCg -3'
miRNA:   3'- -GGCGCUu------------CGGCGGCGGCC-GCCU----UGCG- -5'
10763 3' -61.7 NC_002794.1 + 194015 0.81 0.128331
Target:  5'- uUCGCGGccGCCGCCGCCGGCGccuCGCc -3'
miRNA:   3'- -GGCGCUu-CGGCGGCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 107159 0.81 0.131469
Target:  5'- cCCgGCGAgGGCCGCCGCuacgCGGCGGAgccgGCGCc -3'
miRNA:   3'- -GG-CGCU-UCGGCGGCG----GCCGCCU----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.