miRNA display CGI


Results 21 - 40 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 51212 0.8 0.137958
Target:  5'- cCCGCGGAGCgGCCgGCCGGCcGAugGg -3'
miRNA:   3'- -GGCGCUUCGgCGG-CGGCCGcCUugCg -5'
10763 3' -61.7 NC_002794.1 + 184451 0.8 0.141312
Target:  5'- gCGCGccGCUGCCGCCcGCGGGccGCGCg -3'
miRNA:   3'- gGCGCuuCGGCGGCGGcCGCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 181527 0.8 0.141312
Target:  5'- uCCGUucGcCCGCCGCCGGCGGGccgGCGCu -3'
miRNA:   3'- -GGCGcuUcGGCGGCGGCCGCCU---UGCG- -5'
10763 3' -61.7 NC_002794.1 + 134156 0.8 0.141312
Target:  5'- uCCGUGuugcuGGCCGUgGCCGcGCGGAugGCc -3'
miRNA:   3'- -GGCGCu----UCGGCGgCGGC-CGCCUugCG- -5'
10763 3' -61.7 NC_002794.1 + 93995 0.8 0.14474
Target:  5'- gCGCGGAcGCCGgCGCCGGCGGcGgGCc -3'
miRNA:   3'- gGCGCUU-CGGCgGCGGCCGCCuUgCG- -5'
10763 3' -61.7 NC_002794.1 + 82740 0.8 0.14474
Target:  5'- gCCGCG-AGCCGCCGCCaccgccGCGGAcuCGCu -3'
miRNA:   3'- -GGCGCuUCGGCGGCGGc-----CGCCUu-GCG- -5'
10763 3' -61.7 NC_002794.1 + 82658 0.8 0.14474
Target:  5'- gCCGCGcucgacGCCG-CGCCGGCGGAuCGCa -3'
miRNA:   3'- -GGCGCuu----CGGCgGCGGCCGCCUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 61514 0.8 0.151464
Target:  5'- cCCGcCGGacGGCgGCCGCCGGCGGccgccgcgaagacGACGCc -3'
miRNA:   3'- -GGC-GCU--UCGgCGGCGGCCGCC-------------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 192422 0.8 0.151826
Target:  5'- gCCGCGAcgGGuCCGCgGCCGGCGcGucGCGCg -3'
miRNA:   3'- -GGCGCU--UC-GGCGgCGGCCGC-Cu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 68973 0.79 0.159224
Target:  5'- uCCGCG-GGCCGCgaCGCCGGCGucGACGCu -3'
miRNA:   3'- -GGCGCuUCGGCG--GCGGCCGCc-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 104411 0.79 0.159224
Target:  5'- gCCGCGGccucGGCCucgGCCGCCGGCccGGACGCc -3'
miRNA:   3'- -GGCGCU----UCGG---CGGCGGCCGc-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 66536 0.79 0.162659
Target:  5'- uCCGCGAAgGUCGgCGCCGGCGGAuaguaauACGg -3'
miRNA:   3'- -GGCGCUU-CGGCgGCGGCCGCCU-------UGCg -5'
10763 3' -61.7 NC_002794.1 + 14766 0.79 0.166947
Target:  5'- gCCGuCGAGGCCGCUgaggccggcgagGCCGGCGuGAcCGCg -3'
miRNA:   3'- -GGC-GCUUCGGCGG------------CGGCCGC-CUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 66710 0.79 0.166947
Target:  5'- gCCGCGcccggcacGGCCGCCGCCaccgccggcgguGGCGGcGGCGCg -3'
miRNA:   3'- -GGCGCu-------UCGGCGGCGG------------CCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 61872 0.79 0.170933
Target:  5'- gCCGCGc-GCCGUCGUCGGCGccGCGCg -3'
miRNA:   3'- -GGCGCuuCGGCGGCGGCCGCcuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 70667 0.79 0.175003
Target:  5'- gCGCGGcGGCCGCCG-CGGCGGuGACGUc -3'
miRNA:   3'- gGCGCU-UCGGCGGCgGCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 90463 0.79 0.175003
Target:  5'- uCgGCGAGGCCG-CGCgCGGCGGGGcCGCc -3'
miRNA:   3'- -GgCGCUUCGGCgGCG-GCCGCCUU-GCG- -5'
10763 3' -61.7 NC_002794.1 + 101659 0.79 0.175003
Target:  5'- gCgGCGGuuAGcCCGUccgaaaCGCCGGCGGAGCGCg -3'
miRNA:   3'- -GgCGCU--UC-GGCG------GCGGCCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194045 0.78 0.17916
Target:  5'- gCCGcCGccGCCGCCGCCGcCGaGAGCGCc -3'
miRNA:   3'- -GGC-GCuuCGGCGGCGGCcGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 66961 0.78 0.183405
Target:  5'- gCCgGCG-AGUCGCuCGCCGGgGGAGCGUc -3'
miRNA:   3'- -GG-CGCuUCGGCG-GCGGCCgCCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.