miRNA display CGI


Results 41 - 60 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 66961 0.78 0.183405
Target:  5'- gCCgGCG-AGUCGCuCGCCGGgGGAGCGUc -3'
miRNA:   3'- -GG-CGCuUCGGCG-GCGGCCgCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 107750 0.78 0.187738
Target:  5'- aCGCuucGCgCGCCGCUGGCuGGAGCGCg -3'
miRNA:   3'- gGCGcuuCG-GCGGCGGCCG-CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 32288 0.78 0.19216
Target:  5'- -aGCGAcGCCGCCGCCgccgcGGCGGccGCGCc -3'
miRNA:   3'- ggCGCUuCGGCGGCGG-----CCGCCu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 137423 0.78 0.20128
Target:  5'- gCCGCGGAGaCCG-CGCCGGCgcucuGGAACGa -3'
miRNA:   3'- -GGCGCUUC-GGCgGCGGCCG-----CCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 141646 0.77 0.20598
Target:  5'- gCCgGCGuGGCCgcgGCCGCCGGCGGGucgaGCg -3'
miRNA:   3'- -GG-CGCuUCGG---CGGCGGCCGCCUug--CG- -5'
10763 3' -61.7 NC_002794.1 + 72745 0.77 0.20598
Target:  5'- cCCGCGGcGGCCGCCGaCCGaGCGGAucuuaaauaGCg -3'
miRNA:   3'- -GGCGCU-UCGGCGGC-GGC-CGCCUug-------CG- -5'
10763 3' -61.7 NC_002794.1 + 72912 0.77 0.20598
Target:  5'- gUCGCGcucGCCGCCGCCGuCGGAGCcgGCg -3'
miRNA:   3'- -GGCGCuu-CGGCGGCGGCcGCCUUG--CG- -5'
10763 3' -61.7 NC_002794.1 + 101259 0.77 0.210774
Target:  5'- gCGgGggGCCGCCcCCGGCGccGGugGCg -3'
miRNA:   3'- gGCgCuuCGGCGGcGGCCGC--CUugCG- -5'
10763 3' -61.7 NC_002794.1 + 149696 0.77 0.210774
Target:  5'- gCCGCgGggGCCGCCugGCgGGUGGGcCGCc -3'
miRNA:   3'- -GGCG-CuuCGGCGG--CGgCCGCCUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 48626 0.77 0.215664
Target:  5'- aCGCGGAGCgGCCGUCGG-GGccCGCg -3'
miRNA:   3'- gGCGCUUCGgCGGCGGCCgCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 76950 0.77 0.220652
Target:  5'- aCCGCGGAGaCGCCGuCCGGcCGGccCGCc -3'
miRNA:   3'- -GGCGCUUCgGCGGC-GGCC-GCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 126603 0.77 0.220652
Target:  5'- gCGcCGAGGCCGgCGCCgacgucgcGGCGuGAGCGCg -3'
miRNA:   3'- gGC-GCUUCGGCgGCGG--------CCGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 101111 0.77 0.225736
Target:  5'- aCUaCGAGGCCGCCGCCG-UGGcGCGCc -3'
miRNA:   3'- -GGcGCUUCGGCGGCGGCcGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 28659 0.77 0.225736
Target:  5'- cCCGCGGgccccGGaaCCGCCGCCGGUGGccguCGCc -3'
miRNA:   3'- -GGCGCU-----UC--GGCGGCGGCCGCCuu--GCG- -5'
10763 3' -61.7 NC_002794.1 + 124389 0.77 0.23092
Target:  5'- gUCGCGGcGGCgCGUCGCCGGUcgucGGGGCGCc -3'
miRNA:   3'- -GGCGCU-UCG-GCGGCGGCCG----CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187444 0.77 0.23092
Target:  5'- gCCGCGccgucuGCCGCCGCuCGGCGucgcucGGCGCg -3'
miRNA:   3'- -GGCGCuu----CGGCGGCG-GCCGCc-----UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 129505 0.77 0.23092
Target:  5'- uCCGUGucGCCGCCG-CGGuCGGcGCGCu -3'
miRNA:   3'- -GGCGCuuCGGCGGCgGCC-GCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 12763 0.76 0.235672
Target:  5'- gCCGCucuuGCCGCCGCCgcgcuucGGCGaGAACGUg -3'
miRNA:   3'- -GGCGcuu-CGGCGGCGG-------CCGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 154361 0.76 0.236205
Target:  5'- cCCGCGcgguccAGGCCGCgGCggCGGCGGGcACGCc -3'
miRNA:   3'- -GGCGC------UUCGGCGgCG--GCCGCCU-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 49385 0.76 0.24159
Target:  5'- gCGCGccAGGCCGCCGCCgucggccacGGCGGc-CGCg -3'
miRNA:   3'- gGCGC--UUCGGCGGCGG---------CCGCCuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.