miRNA display CGI


Results 21 - 40 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 122448 0.66 0.774809
Target:  5'- -aGCG-AGCgGCUGCUGGgcuCGGugAACGCg -3'
miRNA:   3'- ggCGCuUCGgCGGCGGCC---GCC--UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 21918 0.66 0.774809
Target:  5'- gCgGCGGAGaCGaCGgCGGCGGcgcGGCGCu -3'
miRNA:   3'- -GgCGCUUCgGCgGCgGCCGCC---UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 76538 0.66 0.774809
Target:  5'- gCCGCGGcgccgacgcGGUCGCgCGCCGGguacucaccCGGccCGCc -3'
miRNA:   3'- -GGCGCU---------UCGGCG-GCGGCC---------GCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 57502 0.66 0.774809
Target:  5'- gCGCGcccGCCGCCuaCGGCGaGuuCGUg -3'
miRNA:   3'- gGCGCuu-CGGCGGcgGCCGC-CuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 20179 0.66 0.774809
Target:  5'- aCCGCGAgAGcCCGCCGCCcaaccuGCu--ACGCc -3'
miRNA:   3'- -GGCGCU-UC-GGCGGCGGc-----CGccuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 116130 0.66 0.774809
Target:  5'- gCCGCGgcGgCGgCGgCGGCGGccAGgGCc -3'
miRNA:   3'- -GGCGCuuCgGCgGCgGCCGCC--UUgCG- -5'
10763 3' -61.7 NC_002794.1 + 115866 0.66 0.774809
Target:  5'- nCGCGAGGgguccggggcguCCGgggCGUCcGCGGAGCGCg -3'
miRNA:   3'- gGCGCUUC------------GGCg--GCGGcCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 126122 0.66 0.774809
Target:  5'- gCCGCGcucGUcugCGCCgguuucugGCCGGCccucuGGGACGCg -3'
miRNA:   3'- -GGCGCuu-CG---GCGG--------CGGCCG-----CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 138756 0.66 0.774809
Target:  5'- uCCG-GggGCCgagucgcgGCgGUCGGUGGAggggaggggucACGCa -3'
miRNA:   3'- -GGCgCuuCGG--------CGgCGGCCGCCU-----------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 84984 0.66 0.774809
Target:  5'- gCCGCGAaaccccacgAGcCCGaCCGCCGcGCucGggUGCc -3'
miRNA:   3'- -GGCGCU---------UC-GGC-GGCGGC-CGc-CuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 89380 0.66 0.774809
Target:  5'- gCCGUuucgGGAGCgGUCGCgGugagguccGUGGAGCGCc -3'
miRNA:   3'- -GGCG----CUUCGgCGGCGgC--------CGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 105753 0.66 0.773938
Target:  5'- gCCGuCGucGCCGUUcaucgggGUCGGUGGGcCGCg -3'
miRNA:   3'- -GGC-GCuuCGGCGG-------CGGCCGCCUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 114197 0.66 0.773938
Target:  5'- -aGCGgcGCCacgGCCGgcgucuCCGGCGGcagccagccgaucAGCGCg -3'
miRNA:   3'- ggCGCuuCGG---CGGC------GGCCGCC-------------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 92046 0.66 0.772194
Target:  5'- gCCGUGAAccuguguccggcguGCCGCgGCCGGUGc--UGCc -3'
miRNA:   3'- -GGCGCUU--------------CGGCGgCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 37932 0.66 0.772194
Target:  5'- aCCGcCGcGGCCGCCcguGCCucggcgacucgcucGGCGGcuCGUg -3'
miRNA:   3'- -GGC-GCuUCGGCGG---CGG--------------CCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 167150 0.66 0.766053
Target:  5'- aUCGCGAuuuu-CCGCCGGCguauGGGugGCg -3'
miRNA:   3'- -GGCGCUucggcGGCGGCCG----CCUugCG- -5'
10763 3' -61.7 NC_002794.1 + 78924 0.66 0.766053
Target:  5'- cCCGuCGGGcacCCGCCGCCGGCaGGucacccAgGCc -3'
miRNA:   3'- -GGC-GCUUc--GGCGGCGGCCG-CCu-----UgCG- -5'
10763 3' -61.7 NC_002794.1 + 110260 0.66 0.766053
Target:  5'- cCCGCGcGG-CGUCGCgaCGGCGGc-CGCc -3'
miRNA:   3'- -GGCGCuUCgGCGGCG--GCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 72460 0.66 0.766053
Target:  5'- cCCGCGcccGGCC-CCG-CGGCGG--CGCc -3'
miRNA:   3'- -GGCGCu--UCGGcGGCgGCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 106345 0.66 0.766053
Target:  5'- uUCGCcGGGUCGaCgGCgGGCGG-GCGCc -3'
miRNA:   3'- -GGCGcUUCGGC-GgCGgCCGCCuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.