miRNA display CGI


Results 41 - 60 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 104897 0.66 0.766053
Target:  5'- gCCGCGAGGCgccgUGCUGCUcgagcaGGCGccGCGUc -3'
miRNA:   3'- -GGCGCUUCG----GCGGCGG------CCGCcuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 91575 0.66 0.766053
Target:  5'- gCCGCuGAugaacuacuccgAGUgGCCGCUGGUGc-GCGCg -3'
miRNA:   3'- -GGCG-CU------------UCGgCGGCGGCCGCcuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 14512 0.66 0.766053
Target:  5'- cUCGCGgcGCucguggCGCCGCuCGGCcacGGCGCu -3'
miRNA:   3'- -GGCGCuuCG------GCGGCG-GCCGcc-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 183159 0.66 0.766053
Target:  5'- aCGCGGccgGGCUGCCcgaGCCGGuCGGGg--- -3'
miRNA:   3'- gGCGCU---UCGGCGG---CGGCC-GCCUugcg -5'
10763 3' -61.7 NC_002794.1 + 188359 0.66 0.766053
Target:  5'- cCCGUccGGCCGgCGgCGGCcGAGgGCg -3'
miRNA:   3'- -GGCGcuUCGGCgGCgGCCGcCUUgCG- -5'
10763 3' -61.7 NC_002794.1 + 78924 0.66 0.766053
Target:  5'- cCCGuCGGGcacCCGCCGCCGGCaGGucacccAgGCc -3'
miRNA:   3'- -GGC-GCUUc--GGCGGCGGCCG-CCu-----UgCG- -5'
10763 3' -61.7 NC_002794.1 + 110260 0.66 0.766053
Target:  5'- cCCGCGcGG-CGUCGCgaCGGCGGc-CGCc -3'
miRNA:   3'- -GGCGCuUCgGCGGCG--GCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 72460 0.66 0.766053
Target:  5'- cCCGCGcccGGCC-CCG-CGGCGG--CGCc -3'
miRNA:   3'- -GGCGCu--UCGGcGGCgGCCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 106345 0.66 0.766053
Target:  5'- uUCGCcGGGUCGaCgGCgGGCGG-GCGCc -3'
miRNA:   3'- -GGCGcUUCGGC-GgCGgCCGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 167150 0.66 0.766053
Target:  5'- aUCGCGAuuuu-CCGCCGGCguauGGGugGCg -3'
miRNA:   3'- -GGCGCUucggcGGCGGCCG----CCUugCG- -5'
10763 3' -61.7 NC_002794.1 + 154181 0.66 0.763406
Target:  5'- aCGUGAucagGGCCGCCgacgaucuggagacGCUGGCGcGGcaagGCGUg -3'
miRNA:   3'- gGCGCU----UCGGCGG--------------CGGCCGC-CU----UGCG- -5'
10763 3' -61.7 NC_002794.1 + 127181 0.66 0.757194
Target:  5'- gCCGC--AGUCGUCGCCG-CGGc-CGCa -3'
miRNA:   3'- -GGCGcuUCGGCGGCGGCcGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 137456 0.66 0.757194
Target:  5'- uCgGCGGAauCCGCCGUguCGGCGGccucguagagcAGCGCc -3'
miRNA:   3'- -GgCGCUUc-GGCGGCG--GCCGCC-----------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 141551 0.66 0.757194
Target:  5'- gCGCGAAuCCGCCaCCcGCGGc-CGCg -3'
miRNA:   3'- gGCGCUUcGGCGGcGGcCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 146592 0.66 0.757194
Target:  5'- cUCGaCGAAGCUGUCGagcgacgaaggCGGCGaGGACGUc -3'
miRNA:   3'- -GGC-GCUUCGGCGGCg----------GCCGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 142203 0.66 0.757194
Target:  5'- gCGgGAAGCgGCgGCggcagCGGCGGuGCGg -3'
miRNA:   3'- gGCgCUUCGgCGgCG-----GCCGCCuUGCg -5'
10763 3' -61.7 NC_002794.1 + 94147 0.66 0.757194
Target:  5'- aCCGCGgcGgCGCUGgaCGGUGGGGgGg -3'
miRNA:   3'- -GGCGCuuCgGCGGCg-GCCGCCUUgCg -5'
10763 3' -61.7 NC_002794.1 + 12387 0.66 0.757194
Target:  5'- gCCGCGcucgccuGGCCGacaaCCGCaC-GCGGAcgGCGCg -3'
miRNA:   3'- -GGCGCu------UCGGC----GGCG-GcCGCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 134904 0.66 0.757194
Target:  5'- aCGCGcucGGGUgaaacuuuuCGCCGCCGgGCGGAcGgGCu -3'
miRNA:   3'- gGCGC---UUCG---------GCGGCGGC-CGCCU-UgCG- -5'
10763 3' -61.7 NC_002794.1 + 58655 0.66 0.757194
Target:  5'- -gGCGAcgGGCUGCUgcaGCCGGCcGugcACGCg -3'
miRNA:   3'- ggCGCU--UCGGCGG---CGGCCGcCu--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.