miRNA display CGI


Results 61 - 80 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 193110 0.66 0.757194
Target:  5'- aCCGaagaGggGugcaCCGUCGUCGGCGGca-GCu -3'
miRNA:   3'- -GGCg---CuuC----GGCGGCGGCCGCCuugCG- -5'
10763 3' -61.7 NC_002794.1 + 146648 0.66 0.757194
Target:  5'- gCgGCGAcgaacacgAGCCGuuGCUGGacgaGGAggacgucucgGCGCu -3'
miRNA:   3'- -GgCGCU--------UCGGCggCGGCCg---CCU----------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 70843 0.66 0.756303
Target:  5'- aCGCGAuccccgacgugccGGCCuccuCCGgCGGCGGcAGCGg -3'
miRNA:   3'- gGCGCU-------------UCGGc---GGCgGCCGCC-UUGCg -5'
10763 3' -61.7 NC_002794.1 + 120712 0.66 0.751832
Target:  5'- -gGCGccGCCGUCGUucuucgucgugggcaCGGCgguccgGGAGCGCa -3'
miRNA:   3'- ggCGCuuCGGCGGCG---------------GCCG------CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 185407 0.66 0.74824
Target:  5'- gCGCGGGcCCGaCCGCCGucgacucgacGCGGcgccauGCGCg -3'
miRNA:   3'- gGCGCUUcGGC-GGCGGC----------CGCCu-----UGCG- -5'
10763 3' -61.7 NC_002794.1 + 113987 0.66 0.74824
Target:  5'- uCCuCGAgcAGCCGUucgaggCGCCGGaGGAGCGa -3'
miRNA:   3'- -GGcGCU--UCGGCG------GCGGCCgCCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 191862 0.66 0.74824
Target:  5'- gUCGUGAaaGGCCGgCGgCGGagGGGGCGg -3'
miRNA:   3'- -GGCGCU--UCGGCgGCgGCCg-CCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 47340 0.66 0.74824
Target:  5'- cCCGCGGcGGCgGCCuCCGGaCGuucGCGCu -3'
miRNA:   3'- -GGCGCU-UCGgCGGcGGCC-GCcu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 69015 0.66 0.74824
Target:  5'- uCCGCGu-GCgCGaCGCCGGCGcccuCGCc -3'
miRNA:   3'- -GGCGCuuCG-GCgGCGGCCGCcuu-GCG- -5'
10763 3' -61.7 NC_002794.1 + 193795 0.66 0.74824
Target:  5'- cCCGaCGAcGCCGgCGCCcgcucgucuGGCGccGACGCg -3'
miRNA:   3'- -GGC-GCUuCGGCgGCGG---------CCGCc-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 95000 0.66 0.745535
Target:  5'- gCCGCuugcugucgcugauGggGCgGCugugcggcaucuCGCCGGUGGcGGCGCc -3'
miRNA:   3'- -GGCG--------------CuuCGgCG------------GCGGCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 58816 0.66 0.744632
Target:  5'- cCCGCccuuccucaaCCGCCuGCCGcGCGaGGACGCc -3'
miRNA:   3'- -GGCGcuuc------GGCGG-CGGC-CGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 138580 0.66 0.739196
Target:  5'- cUCGauCGAGGCgCGUCgGCgCGGCGGAGaGCg -3'
miRNA:   3'- -GGC--GCUUCG-GCGG-CG-GCCGCCUUgCG- -5'
10763 3' -61.7 NC_002794.1 + 33637 0.66 0.739196
Target:  5'- gUGCGGcaCCGCCGCacgGGCGcgcuGAGCGUg -3'
miRNA:   3'- gGCGCUucGGCGGCGg--CCGC----CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 43233 0.66 0.739196
Target:  5'- aUGCGcugcAGCgGCa-CCGGcCGGAACGCc -3'
miRNA:   3'- gGCGCu---UCGgCGgcGGCC-GCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 83946 0.66 0.739196
Target:  5'- aCCGCcuGGaCCGCCuggGCCGcCuGGAGCGCc -3'
miRNA:   3'- -GGCGcuUC-GGCGG---CGGCcG-CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 58354 0.66 0.739196
Target:  5'- gCCGCucGGCCuggcGCCGCCcgacuuccaggaGGCGcgcGGGCGCc -3'
miRNA:   3'- -GGCGcuUCGG----CGGCGG------------CCGC---CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 52620 0.66 0.739196
Target:  5'- cCCGCccgaCCGCCGCCGcGUcGAACGg -3'
miRNA:   3'- -GGCGcuucGGCGGCGGC-CGcCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 148685 0.66 0.739196
Target:  5'- aCGUGcucAGCCGCuCGuggaacacuuuCCGGUGGAAgGCc -3'
miRNA:   3'- gGCGCu--UCGGCG-GC-----------GGCCGCCUUgCG- -5'
10763 3' -61.7 NC_002794.1 + 115949 0.66 0.739196
Target:  5'- gCCGCGu-GUCGCCGgggaCCGugggggggaGCGGGACGg -3'
miRNA:   3'- -GGCGCuuCGGCGGC----GGC---------CGCCUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.