miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 17 0.76 0.25836
Target:  5'- gCCGCGAacacgaaaacgaGGCCGCCGCgGGCucucGGAcgaacggccgACGCc -3'
miRNA:   3'- -GGCGCU------------UCGGCGGCGgCCG----CCU----------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 129 0.68 0.655049
Target:  5'- gCCGacCGGAGCCcgggaCCGCCG-CaGGGGCGCa -3'
miRNA:   3'- -GGC--GCUUCGGc----GGCGGCcG-CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 251 0.74 0.31437
Target:  5'- aCCcCGGAcuGCCGCCGCgCGcGCGG-ACGCg -3'
miRNA:   3'- -GGcGCUU--CGGCGGCG-GC-CGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 440 0.67 0.730072
Target:  5'- gCGCGAA-UUGCCcCCGGgGGGAUGUc -3'
miRNA:   3'- gGCGCUUcGGCGGcGGCCgCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 488 0.7 0.523099
Target:  5'- -gGCGuuuAGcCCGUCGCCugGGUGGGGCGUu -3'
miRNA:   3'- ggCGCu--UC-GGCGGCGG--CCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 871 0.69 0.578963
Target:  5'- cCCGCGAGGCgGUCGgCGugcgcGCGGGccgggugccaACGCc -3'
miRNA:   3'- -GGCGCUUCGgCGGCgGC-----CGCCU----------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 6931 0.7 0.535971
Target:  5'- gCCGC--AGCCGCCGCgCGGCacccucucggucucgGGcuCGCu -3'
miRNA:   3'- -GGCGcuUCGGCGGCG-GCCG---------------CCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 8040 0.74 0.334276
Target:  5'- cCCGagGAAGaCGCCGCaccgucuUGGCGGGGCGCc -3'
miRNA:   3'- -GGCg-CUUCgGCGGCG-------GCCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 10319 0.73 0.379094
Target:  5'- uCCGaCGAcucGGCCGUCGUCGGCGc--CGCg -3'
miRNA:   3'- -GGC-GCU---UCGGCGGCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 11800 0.73 0.371476
Target:  5'- uCCGUGgcGCCGCCGCCGcCGu--CGCc -3'
miRNA:   3'- -GGCGCuuCGGCGGCGGCcGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 11844 0.73 0.356557
Target:  5'- gCCGCGAccuCCGaCCGCCGGCGacGAcCGCc -3'
miRNA:   3'- -GGCGCUuc-GGC-GGCGGCCGC--CUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 12179 0.75 0.282184
Target:  5'- gCCGcCGAcGCCGCCG-CGGCcGGGCGCc -3'
miRNA:   3'- -GGC-GCUuCGGCGGCgGCCGcCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 12221 0.69 0.597901
Target:  5'- gCgGCGucGgCGgCGCCGGCGGcgccguccgcGGCGCc -3'
miRNA:   3'- -GgCGCuuCgGCgGCGGCCGCC----------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 12387 0.66 0.757194
Target:  5'- gCCGCGcucgccuGGCCGacaaCCGCaC-GCGGAcgGCGCg -3'
miRNA:   3'- -GGCGCu------UCGGC----GGCG-GcCGCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 12763 0.76 0.235672
Target:  5'- gCCGCucuuGCCGCCGCCgcgcuucGGCGaGAACGUg -3'
miRNA:   3'- -GGCGcuu-CGGCGGCGG-------CCGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 12921 0.69 0.578963
Target:  5'- aCCGCcuGGCCGUCGacgacCUGGCGGAcuuCGUg -3'
miRNA:   3'- -GGCGcuUCGGCGGC-----GGCCGCCUu--GCG- -5'
10763 3' -61.7 NC_002794.1 + 13116 0.73 0.356557
Target:  5'- uCgGCGggGUCGCCGCgCGGCucgcucGCGCg -3'
miRNA:   3'- -GgCGCuuCGGCGGCG-GCCGccu---UGCG- -5'
10763 3' -61.7 NC_002794.1 + 13272 0.72 0.410592
Target:  5'- -gGUGGAGCgGCCGCuguugaCGGCGGcaugGGCGCu -3'
miRNA:   3'- ggCGCUUCGgCGGCG------GCCGCC----UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 13804 0.74 0.321132
Target:  5'- uUCGCGAcgGGCC-CgGCCGGCGGcGACGg -3'
miRNA:   3'- -GGCGCU--UCGGcGgCGGCCGCC-UUGCg -5'
10763 3' -61.7 NC_002794.1 + 13852 0.7 0.541522
Target:  5'- aCCGCcucGucGCCGCCGCC-GCGacccgguucuccGAGCGCc -3'
miRNA:   3'- -GGCG---CuuCGGCGGCGGcCGC------------CUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.