miRNA display CGI


Results 21 - 40 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 14046 0.68 0.635994
Target:  5'- -gGCGAuccuuaCGCCGacggcgaucCUGGCGGAGCGCc -3'
miRNA:   3'- ggCGCUucg---GCGGC---------GGCCGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 14453 0.7 0.52127
Target:  5'- uCCGCGGgcgaccgugucgagcGGCgCGCCGCgcucgcuguucgcggCGGCGGcccGCGCu -3'
miRNA:   3'- -GGCGCU---------------UCG-GCGGCG---------------GCCGCCu--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 14512 0.66 0.766053
Target:  5'- cUCGCGgcGCucguggCGCCGCuCGGCcacGGCGCu -3'
miRNA:   3'- -GGCGCuuCG------GCGGCG-GCCGcc-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 14563 0.67 0.71161
Target:  5'- gCGCGGgaggcgAGCCgGCCGaCCGaaGCGGGccguggcgaGCGCg -3'
miRNA:   3'- gGCGCU------UCGG-CGGC-GGC--CGCCU---------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 14615 0.67 0.687267
Target:  5'- aCCGCGAcggggccggagacggGGCCGggcacggagaCGCCGGCGc--CGCg -3'
miRNA:   3'- -GGCGCU---------------UCGGCg---------GCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 14677 0.66 0.739196
Target:  5'- cUCGCGGcGGCgGUCGCgcugcuccugaCGGCguggGGAGCGCu -3'
miRNA:   3'- -GGCGCU-UCGgCGGCG-----------GCCG----CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 14766 0.79 0.166947
Target:  5'- gCCGuCGAGGCCGCUgaggccggcgagGCCGGCGuGAcCGCg -3'
miRNA:   3'- -GGC-GCUUCGGCGG------------CGGCCGC-CUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 16147 0.68 0.645526
Target:  5'- gCCGCuucuucucGGAGCCGgCaugaaCGGCGGGugGCc -3'
miRNA:   3'- -GGCG--------CUUCGGCgGcg---GCCGCCUugCG- -5'
10763 3' -61.7 NC_002794.1 + 16291 0.67 0.729155
Target:  5'- -gGCGGagucuagccuggcGGCCGCgGCCGGCuGGAucccccUGCc -3'
miRNA:   3'- ggCGCU-------------UCGGCGgCGGCCG-CCUu-----GCG- -5'
10763 3' -61.7 NC_002794.1 + 16498 0.68 0.645526
Target:  5'- gCCGCcaccGCCGCCGCCGucccCGGcguCGCc -3'
miRNA:   3'- -GGCGcuu-CGGCGGCGGCc---GCCuu-GCG- -5'
10763 3' -61.7 NC_002794.1 + 16585 0.68 0.664556
Target:  5'- aCCGCc--GCCGCCGucuCCGGCGu--CGCc -3'
miRNA:   3'- -GGCGcuuCGGCGGC---GGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 16909 0.72 0.4179
Target:  5'- gCCGCGAuccgAGCCGCCgacugucGUCGGCGccGAGcCGCc -3'
miRNA:   3'- -GGCGCU----UCGGCGG-------CGGCCGC--CUU-GCG- -5'
10763 3' -61.7 NC_002794.1 + 17128 0.74 0.342064
Target:  5'- aCgGuCGAAGCCGgCGaaaCGGCGGuAGCGCc -3'
miRNA:   3'- -GgC-GCUUCGGCgGCg--GCCGCC-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 17277 0.68 0.626459
Target:  5'- cCCGgGcacGCCGCCGCCGaCGGucACGa -3'
miRNA:   3'- -GGCgCuu-CGGCGGCGGCcGCCu-UGCg -5'
10763 3' -61.7 NC_002794.1 + 17416 0.69 0.596952
Target:  5'- aCCGCGGccaucgcGGUcuccgCGCCGCCGGCGcucGGGCccGCg -3'
miRNA:   3'- -GGCGCU-------UCG-----GCGGCGGCCGC---CUUG--CG- -5'
10763 3' -61.7 NC_002794.1 + 17494 0.69 0.588418
Target:  5'- uUGCGAucGCCGaCGCCGGCcGAgaucgGCGCc -3'
miRNA:   3'- gGCGCUu-CGGCgGCGGCCGcCU-----UGCG- -5'
10763 3' -61.7 NC_002794.1 + 17628 0.68 0.654097
Target:  5'- gCCGCGgcGagcgaucCCGCCGCC-GCGGc-CGCc -3'
miRNA:   3'- -GGCGCuuC-------GGCGGCGGcCGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 17667 0.75 0.275464
Target:  5'- gCCGCcaccGCCGCCGgccCCGGCGGAgaccgagccgcacACGCa -3'
miRNA:   3'- -GGCGcuu-CGGCGGC---GGCCGCCU-------------UGCG- -5'
10763 3' -61.7 NC_002794.1 + 17957 0.71 0.490579
Target:  5'- cCCGCGAcucgcccgggccgugAGCCuggcgcccacgGCCGCCGGCGaguacuacgaGGACGg -3'
miRNA:   3'- -GGCGCU---------------UCGG-----------CGGCGGCCGC----------CUUGCg -5'
10763 3' -61.7 NC_002794.1 + 18246 0.67 0.720874
Target:  5'- gCGCGc-GCgGCCGaCCGGCGac-CGCg -3'
miRNA:   3'- gGCGCuuCGgCGGC-GGCCGCcuuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.