miRNA display CGI


Results 41 - 60 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 18520 0.7 0.563904
Target:  5'- aCCGCGAacgcGGCCGCgaacgcgagcacgaGCaCGGCGGcgacCGCg -3'
miRNA:   3'- -GGCGCU----UCGGCGg-------------CG-GCCGCCuu--GCG- -5'
10763 3' -61.7 NC_002794.1 + 18670 0.68 0.672146
Target:  5'- gCCGCuuccucggcuGCCGCCGCCgucuccggcacGGCGGcGGCGg -3'
miRNA:   3'- -GGCGcuu-------CGGCGGCGG-----------CCGCC-UUGCg -5'
10763 3' -61.7 NC_002794.1 + 18729 0.74 0.325929
Target:  5'- gCCGaCG-AGCCGCCccaacgccacgacgGCCGGCGGcAACGa -3'
miRNA:   3'- -GGC-GCuUCGGCGG--------------CGGCCGCC-UUGCg -5'
10763 3' -61.7 NC_002794.1 + 19315 0.66 0.774809
Target:  5'- aCCGCccacGCCG-CGCUGGCGacccGCGCg -3'
miRNA:   3'- -GGCGcuu-CGGCgGCGGCCGCcu--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 19504 0.72 0.443666
Target:  5'- aCgGCGGAggucgcGCCGCucggagCGCCGGCGcGGCGCg -3'
miRNA:   3'- -GgCGCUU------CGGCG------GCGGCCGCcUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 19814 0.71 0.493254
Target:  5'- aCCGCGcgccggacuggaucAAGCUGCUGCaCGGCuacgGGGACuGCg -3'
miRNA:   3'- -GGCGC--------------UUCGGCGGCG-GCCG----CCUUG-CG- -5'
10763 3' -61.7 NC_002794.1 + 19883 0.66 0.783454
Target:  5'- cCUGCGuGGCCGaCCGCUGcCGcGAGCa- -3'
miRNA:   3'- -GGCGCuUCGGC-GGCGGCcGC-CUUGcg -5'
10763 3' -61.7 NC_002794.1 + 20179 0.66 0.774809
Target:  5'- aCCGCGAgAGcCCGCCGCCcaaccuGCu--ACGCc -3'
miRNA:   3'- -GGCGCU-UC-GGCGGCGGc-----CGccuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 20450 0.68 0.644573
Target:  5'- aCCGCuGGAGCCGCC-UCuGCGGccccgaaGACGUg -3'
miRNA:   3'- -GGCG-CUUCGGCGGcGGcCGCC-------UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 21606 0.69 0.578963
Target:  5'- cCCGUGAcccaccgcGCCGUCGCCGGgaGGAcgACGa -3'
miRNA:   3'- -GGCGCUu-------CGGCGGCGGCCg-CCU--UGCg -5'
10763 3' -61.7 NC_002794.1 + 21873 0.74 0.334276
Target:  5'- uCCGCGAGGCCgGCCGCgGgguguccGCGGccuGCGUc -3'
miRNA:   3'- -GGCGCUUCGG-CGGCGgC-------CGCCu--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 21918 0.66 0.774809
Target:  5'- gCgGCGGAGaCGaCGgCGGCGGcgcGGCGCu -3'
miRNA:   3'- -GgCGCUUCgGCgGCgGCCGCC---UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 21987 0.71 0.495936
Target:  5'- uCCGCGAc-CCGUCGCCGGCaagccggccaaGGcgUGCg -3'
miRNA:   3'- -GGCGCUucGGCGGCGGCCG-----------CCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 22098 0.7 0.532282
Target:  5'- cUCGUcAAaaCGUCGCCGGCuGGGACGCu -3'
miRNA:   3'- -GGCGcUUcgGCGGCGGCCG-CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 22562 0.67 0.730072
Target:  5'- aCCGcCGAcacggcacGGCCGCUGUccaagucgcgcuCGGCacggucGGGACGCu -3'
miRNA:   3'- -GGC-GCU--------UCGGCGGCG------------GCCG------CCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 22716 0.72 0.443666
Target:  5'- aCGCGgcGCCGagaGCCGGC-GAACGg -3'
miRNA:   3'- gGCGCuuCGGCgg-CGGCCGcCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 23247 0.71 0.495936
Target:  5'- gCCGUGcGAGCCuCCGCCGcCGGAAcCGUu -3'
miRNA:   3'- -GGCGC-UUCGGcGGCGGCcGCCUU-GCG- -5'
10763 3' -61.7 NC_002794.1 + 26085 0.68 0.655049
Target:  5'- aCGCGggGCagCGCCGacggccCCGGCGau-CGCc -3'
miRNA:   3'- gGCGCuuCG--GCGGC------GGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 26639 0.7 0.541522
Target:  5'- uCCGCGcAcccggacggcGGCCgGCuCGUCGGCGGGguggaGCGCc -3'
miRNA:   3'- -GGCGC-U----------UCGG-CG-GCGGCCGCCU-----UGCG- -5'
10763 3' -61.7 NC_002794.1 + 28659 0.77 0.225736
Target:  5'- cCCGCGGgccccGGaaCCGCCGCCGGUGGccguCGCc -3'
miRNA:   3'- -GGCGCU-----UC--GGCGGCGGCCGCCuu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.