miRNA display CGI


Results 1 - 20 of 587 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 195563 0.71 0.478186
Target:  5'- gCCGCcccGAGCCGCCccgaccgaccGCCGGacCGGccGACGCg -3'
miRNA:   3'- -GGCGc--UUCGGCGG----------CGGCC--GCC--UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 195490 0.7 0.532282
Target:  5'- gCCGCGcggccuaaauAAGCCGCC-CCGGCac-ACGCc -3'
miRNA:   3'- -GGCGC----------UUCGGCGGcGGCCGccuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194899 0.7 0.513978
Target:  5'- uCCGCGAAGCUcguGCuCGCCGacagcaGCGGc-CGCa -3'
miRNA:   3'- -GGCGCUUCGG---CG-GCGGC------CGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 194512 0.71 0.460755
Target:  5'- cCCGCGGcccGCgUGCCGCCGGCccaGcAGCGCc -3'
miRNA:   3'- -GGCGCUu--CG-GCGGCGGCCGc--C-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194252 0.7 0.559219
Target:  5'- uCCGCGAAcagcucgcccgacGCCGCCucGCaCGGCGc-GCGCc -3'
miRNA:   3'- -GGCGCUU-------------CGGCGG--CG-GCCGCcuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194157 0.71 0.495936
Target:  5'- cCCGCG-AGCC-CUGCCGGC---GCGCc -3'
miRNA:   3'- -GGCGCuUCGGcGGCGGCCGccuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194045 0.78 0.17916
Target:  5'- gCCGcCGccGCCGCCGCCGcCGaGAGCGCc -3'
miRNA:   3'- -GGC-GCuuCGGCGGCGGCcGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 194015 0.81 0.128331
Target:  5'- uUCGCGGccGCCGCCGCCGGCGccuCGCc -3'
miRNA:   3'- -GGCGCUu-CGGCGGCGGCCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 193795 0.66 0.74824
Target:  5'- cCCGaCGAcGCCGgCGCCcgcucgucuGGCGccGACGCg -3'
miRNA:   3'- -GGC-GCUuCGGCgGCGG---------CCGCc-UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 193110 0.66 0.757194
Target:  5'- aCCGaagaGggGugcaCCGUCGUCGGCGGca-GCu -3'
miRNA:   3'- -GGCg---CuuC----GGCGGCGGCCGCCuugCG- -5'
10763 3' -61.7 NC_002794.1 + 192768 0.69 0.616928
Target:  5'- aCGcCGAAGCCGUacaCCGaGCcGAACGCg -3'
miRNA:   3'- gGC-GCUUCGGCGgc-GGC-CGcCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 192640 0.7 0.560155
Target:  5'- gCCGCuccAGCCgcGCCGCCGcGCGcucGCGCg -3'
miRNA:   3'- -GGCGcu-UCGG--CGGCGGC-CGCcu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 192422 0.8 0.151826
Target:  5'- gCCGCGAcgGGuCCGCgGCCGGCGcGucGCGCg -3'
miRNA:   3'- -GGCGCU--UC-GGCGgCGGCCGC-Cu-UGCG- -5'
10763 3' -61.7 NC_002794.1 + 192347 0.76 0.252666
Target:  5'- uUCGCGGAccucggccuccGCCGCCGCCGaCcGAGCGCg -3'
miRNA:   3'- -GGCGCUU-----------CGGCGGCGGCcGcCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 192237 0.7 0.541522
Target:  5'- uCgGCGcuGCCGUCGCCGacggcGCGGuuCGCu -3'
miRNA:   3'- -GgCGCuuCGGCGGCGGC-----CGCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 192134 0.73 0.356557
Target:  5'- gCUGCuGuuGCUGCUGCCGGCGcGGuCGCg -3'
miRNA:   3'- -GGCG-CuuCGGCGGCGGCCGC-CUuGCG- -5'
10763 3' -61.7 NC_002794.1 + 191862 0.66 0.74824
Target:  5'- gUCGUGAaaGGCCGgCGgCGGagGGGGCGg -3'
miRNA:   3'- -GGCGCU--UCGGCgGCgGCCg-CCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 191638 0.7 0.513978
Target:  5'- uCCGCcucGCCGuccagcagcCCGCCGGgGGAcgGCGCc -3'
miRNA:   3'- -GGCGcuuCGGC---------GGCGGCCgCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 191005 0.68 0.646479
Target:  5'- gUCGCGAucGGCCGUUcgaucggcacguucaGCCGGacgcaccaguugccCGGGGCGCc -3'
miRNA:   3'- -GGCGCU--UCGGCGG---------------CGGCC--------------GCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 190738 0.69 0.56954
Target:  5'- -aGCGcccGCCGCCGUcucgacgggggCGGCGGccGCGCg -3'
miRNA:   3'- ggCGCuu-CGGCGGCG-----------GCCGCCu-UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.