miRNA display CGI


Results 21 - 40 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10763 3' -61.7 NC_002794.1 + 190347 0.67 0.720874
Target:  5'- aCUGCGucAGGUCGUCgGCCGcGCGGcGCaGCg -3'
miRNA:   3'- -GGCGC--UUCGGCGG-CGGC-CGCCuUG-CG- -5'
10763 3' -61.7 NC_002794.1 + 189854 0.74 0.349257
Target:  5'- gCCGCGGAGCCgucggcgucgucGCCGCCGacCGGccCGCu -3'
miRNA:   3'- -GGCGCUUCGG------------CGGCGGCc-GCCuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 189783 0.75 0.301173
Target:  5'- gCCGCGGGaugcggaaaucGCCGUCGaaccCCGGCGG-GCGCg -3'
miRNA:   3'- -GGCGCUU-----------CGGCGGC----GGCCGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 189135 0.66 0.736467
Target:  5'- gUGCGggGCCGCCaGCgccagacucucccgCGGCaGGucguaGACGUa -3'
miRNA:   3'- gGCGCuuCGGCGG-CG--------------GCCG-CC-----UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 189015 0.74 0.349257
Target:  5'- gUCGCGAcaGGCCaggaGCCGCucgaccgccagCGGCGGGcuGCGCg -3'
miRNA:   3'- -GGCGCU--UCGG----CGGCG-----------GCCGCCU--UGCG- -5'
10763 3' -61.7 NC_002794.1 + 188359 0.66 0.766053
Target:  5'- cCCGUccGGCCGgCGgCGGCcGAGgGCg -3'
miRNA:   3'- -GGCGcuUCGGCgGCgGCCGcCUUgCG- -5'
10763 3' -61.7 NC_002794.1 + 188327 0.81 0.116461
Target:  5'- uCCuCGucGCCGCCGCCGGCGGcgccguCGCg -3'
miRNA:   3'- -GGcGCuuCGGCGGCGGCCGCCuu----GCG- -5'
10763 3' -61.7 NC_002794.1 + 187929 0.68 0.664556
Target:  5'- gCCGCGA--CCGUCGCgucacgcgugCGcGCGcGAGCGCg -3'
miRNA:   3'- -GGCGCUucGGCGGCG----------GC-CGC-CUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187801 0.73 0.356557
Target:  5'- cCCGCGAAGCgaGCgaGCgagUGaGCGGAGCGCg -3'
miRNA:   3'- -GGCGCUUCGg-CGg-CG---GC-CGCCUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187757 0.66 0.778281
Target:  5'- uCCGaaCGccGCCGgCGCCGGUcgccucgaccccggaGGAACGg -3'
miRNA:   3'- -GGC--GCuuCGGCgGCGGCCG---------------CCUUGCg -5'
10763 3' -61.7 NC_002794.1 + 187581 0.7 0.523099
Target:  5'- gCCGuCGgcGCgGCCGCCGuCGcGACGCc -3'
miRNA:   3'- -GGC-GCuuCGgCGGCGGCcGCcUUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187521 0.68 0.625506
Target:  5'- cCCGCGGAGgaacuccCCGCCGCC-GCGac-CGCc -3'
miRNA:   3'- -GGCGCUUC-------GGCGGCGGcCGCcuuGCG- -5'
10763 3' -61.7 NC_002794.1 + 187444 0.77 0.23092
Target:  5'- gCCGCGccgucuGCCGCCGCuCGGCGucgcucGGCGCg -3'
miRNA:   3'- -GGCGCuu----CGGCGGCG-GCCGCc-----UUGCG- -5'
10763 3' -61.7 NC_002794.1 + 187078 0.68 0.626459
Target:  5'- gCCGC-AGGCUGCuCGCCacGUGGAACaGCc -3'
miRNA:   3'- -GGCGcUUCGGCG-GCGGc-CGCCUUG-CG- -5'
10763 3' -61.7 NC_002794.1 + 186959 0.71 0.46943
Target:  5'- gCCGCu-GGCCGCCGCCuccaGCaGcGCGCg -3'
miRNA:   3'- -GGCGcuUCGGCGGCGGc---CGcCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 186793 0.67 0.726401
Target:  5'- gCGCGAAGCCGCgguacgccucCGCCGucaucgucacgaaCGGGaagGCGCc -3'
miRNA:   3'- gGCGCUUCGGCG----------GCGGCc------------GCCU---UGCG- -5'
10763 3' -61.7 NC_002794.1 + 186369 0.67 0.71161
Target:  5'- gCCGCc--GCCGCCGCCGuCGucGcCGCa -3'
miRNA:   3'- -GGCGcuuCGGCGGCGGCcGCcuU-GCG- -5'
10763 3' -61.7 NC_002794.1 + 186292 0.74 0.349257
Target:  5'- aCCGCGGccaggcGGCCgGUCGCC-GCGGcGCGCu -3'
miRNA:   3'- -GGCGCU------UCGG-CGGCGGcCGCCuUGCG- -5'
10763 3' -61.7 NC_002794.1 + 186105 0.71 0.46943
Target:  5'- gUCGcCGucGCCGCCGCCGGgucccCGGAucuccaGCa -3'
miRNA:   3'- -GGC-GCuuCGGCGGCGGCC-----GCCUug----CG- -5'
10763 3' -61.7 NC_002794.1 + 186066 0.72 0.402566
Target:  5'- uCCGUGGccaccGCCGCCGCCGccuucGCcGGGCGCu -3'
miRNA:   3'- -GGCGCUu----CGGCGGCGGC-----CGcCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.