miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 58334 0.66 0.720696
Target:  5'- cGCGUGCUcGUcgggaaCCUGCC-GCUCGgccUGGCg -3'
miRNA:   3'- cCGUACGA-CG------GGACGGaCGGGC---ACCG- -5'
10764 3' -61.6 NC_002794.1 + 751 0.66 0.720696
Target:  5'- gGGCucUGCcGUuuUGCCggGCCCGcGGUg -3'
miRNA:   3'- -CCGu-ACGaCGggACGGa-CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 93384 0.66 0.711188
Target:  5'- cGCAccUGCUGgCC-GCCUcGCCCaaguucgccuccGUGGCc -3'
miRNA:   3'- cCGU--ACGACgGGaCGGA-CGGG------------CACCG- -5'
10764 3' -61.6 NC_002794.1 + 72791 0.66 0.711188
Target:  5'- aGGCuauuaaacGCcGCCCUGCCcGCuCCGUcGCc -3'
miRNA:   3'- -CCGua------CGaCGGGACGGaCG-GGCAcCG- -5'
10764 3' -61.6 NC_002794.1 + 152419 0.66 0.711188
Target:  5'- ---cUGCUGCCCcggGCC-GUCUGUcGGCa -3'
miRNA:   3'- ccguACGACGGGa--CGGaCGGGCA-CCG- -5'
10764 3' -61.6 NC_002794.1 + 82165 0.66 0.711188
Target:  5'- cGGCuccgGC-GCCCgaGCCauaaaGCCCG-GGCg -3'
miRNA:   3'- -CCGua--CGaCGGGa-CGGa----CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 21879 0.66 0.710233
Target:  5'- aGGCcgGCcgcggggUGUCCgcgGCCUGCgUcggugGUGGCg -3'
miRNA:   3'- -CCGuaCG-------ACGGGa--CGGACGgG-----CACCG- -5'
10764 3' -61.6 NC_002794.1 + 148345 0.66 0.701617
Target:  5'- uGGCA-GCUGCUCUGCaacaccuucCCCGaucGGCa -3'
miRNA:   3'- -CCGUaCGACGGGACGgac------GGGCa--CCG- -5'
10764 3' -61.6 NC_002794.1 + 138119 0.66 0.691994
Target:  5'- gGGCGUGgUGCUCgucGCCgGUCuCG-GGCg -3'
miRNA:   3'- -CCGUACgACGGGa--CGGaCGG-GCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 10963 0.66 0.691994
Target:  5'- gGGCcgGCcgagacGUCCgaUGCCUGCuCCGaGGCc -3'
miRNA:   3'- -CCGuaCGa-----CGGG--ACGGACG-GGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 125833 0.66 0.686197
Target:  5'- cGGCGcccugcUGCUGCgCUGCCggcuggacaagcggGCCgUGUGGg -3'
miRNA:   3'- -CCGU------ACGACGgGACGGa-------------CGG-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 847 0.66 0.682325
Target:  5'- cGCGUGCguucgGCCCaGCgCgcGCCCGcgaGGCg -3'
miRNA:   3'- cCGUACGa----CGGGaCG-Ga-CGGGCa--CCG- -5'
10764 3' -61.6 NC_002794.1 + 187369 0.66 0.682325
Target:  5'- aGGCGcGCagcaGCUCcGCC-GaCCCGUGGCa -3'
miRNA:   3'- -CCGUaCGa---CGGGaCGGaC-GGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 145504 0.66 0.681356
Target:  5'- aGGCGUGCgaaggggUGCgCgagGCCgGCCCGagcgccucgGGCg -3'
miRNA:   3'- -CCGUACG-------ACGgGa--CGGaCGGGCa--------CCG- -5'
10764 3' -61.6 NC_002794.1 + 62287 0.67 0.672618
Target:  5'- cGGCcUGCUGCCgCU-CCgaGCCCGcGcGCa -3'
miRNA:   3'- -CCGuACGACGG-GAcGGa-CGGGCaC-CG- -5'
10764 3' -61.6 NC_002794.1 + 65753 0.67 0.672618
Target:  5'- cGGCcccGC-GCCgCcGCC-GCCCGUGGUg -3'
miRNA:   3'- -CCGua-CGaCGG-GaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 93091 0.67 0.672618
Target:  5'- gGGC-UGCgGCCuCU-CCUGCCUGgacuucUGGCa -3'
miRNA:   3'- -CCGuACGaCGG-GAcGGACGGGC------ACCG- -5'
10764 3' -61.6 NC_002794.1 + 111093 0.67 0.662881
Target:  5'- gGGUcgGCggGCCCgGCggGaCCGUGGCc -3'
miRNA:   3'- -CCGuaCGa-CGGGaCGgaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 102158 0.67 0.662881
Target:  5'- cGGCGUGC-GCgCCgggGCCa--UCGUGGCg -3'
miRNA:   3'- -CCGUACGaCG-GGa--CGGacgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 52816 0.67 0.662881
Target:  5'- cGGCA-GCUcGUCCUGCC-GUUCGUagaGGCc -3'
miRNA:   3'- -CCGUaCGA-CGGGACGGaCGGGCA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.