Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10764 | 3' | -61.6 | NC_002794.1 | + | 138444 | 0.67 | 0.653121 |
Target: 5'- uGGCGgcgGC-GCCUcgGCCUGCgaCGUGGa -3' miRNA: 3'- -CCGUa--CGaCGGGa-CGGACGg-GCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 52816 | 0.67 | 0.662881 |
Target: 5'- cGGCA-GCUcGUCCUGCC-GUUCGUagaGGCc -3' miRNA: 3'- -CCGUaCGA-CGGGACGGaCGGGCA---CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 545 | 0.67 | 0.653121 |
Target: 5'- uGGCAUcUUGCCCgGCCUcggcgcGgCgGUGGCa -3' miRNA: 3'- -CCGUAcGACGGGaCGGA------CgGgCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 62287 | 0.67 | 0.672618 |
Target: 5'- cGGCcUGCUGCCgCU-CCgaGCCCGcGcGCa -3' miRNA: 3'- -CCGuACGACGG-GAcGGa-CGGGCaC-CG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 65753 | 0.67 | 0.672618 |
Target: 5'- cGGCcccGC-GCCgCcGCC-GCCCGUGGUg -3' miRNA: 3'- -CCGua-CGaCGG-GaCGGaCGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 93091 | 0.67 | 0.672618 |
Target: 5'- gGGC-UGCgGCCuCU-CCUGCCUGgacuucUGGCa -3' miRNA: 3'- -CCGuACGaCGG-GAcGGACGGGC------ACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 111093 | 0.67 | 0.662881 |
Target: 5'- gGGUcgGCggGCCCgGCggGaCCGUGGCc -3' miRNA: 3'- -CCGuaCGa-CGGGaCGgaCgGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 102158 | 0.67 | 0.662881 |
Target: 5'- cGGCGUGC-GCgCCgggGCCa--UCGUGGCg -3' miRNA: 3'- -CCGUACGaCG-GGa--CGGacgGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 180592 | 0.67 | 0.653121 |
Target: 5'- cGGCAgcaGCUGUCCUcgcGCCgcggGCCaCGacacGGCg -3' miRNA: 3'- -CCGUa--CGACGGGA---CGGa---CGG-GCa---CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 116140 | 0.68 | 0.564459 |
Target: 5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3' miRNA: 3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 59026 | 0.68 | 0.564459 |
Target: 5'- uGCGUGCUGCCC-GCgCUcaccaacaaccgcGCCUGcGGCc -3' miRNA: 3'- cCGUACGACGGGaCG-GA-------------CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 131383 | 0.68 | 0.565422 |
Target: 5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3' miRNA: 3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 55649 | 0.68 | 0.613023 |
Target: 5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3' miRNA: 3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 150562 | 0.68 | 0.575075 |
Target: 5'- cGGCGcUGgaGCUCaucaacGCCUGCCCucgGGCg -3' miRNA: 3'- -CCGU-ACgaCGGGa-----CGGACGGGca-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 47526 | 0.68 | 0.614 |
Target: 5'- cGGCAccgGCUGCCCUcGCCgauCCCGcaccaGCa -3' miRNA: 3'- -CCGUa--CGACGGGA-CGGac-GGGCac---CG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 131288 | 0.68 | 0.614 |
Target: 5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3' miRNA: 3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 80440 | 0.68 | 0.614 |
Target: 5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3' miRNA: 3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 34041 | 0.68 | 0.614 |
Target: 5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3' miRNA: 3'- cCGuACGACGGgaCGGaCGGGCacCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 16314 | 0.69 | 0.499328 |
Target: 5'- cGGCcgGCUGgauCCC--CCUGCCCcUGGCc -3' miRNA: 3'- -CCGuaCGAC---GGGacGGACGGGcACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 120498 | 0.69 | 0.546249 |
Target: 5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3' miRNA: 3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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