Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10764 | 3' | -61.6 | NC_002794.1 | + | 101945 | 1.13 | 0.00057 |
Target: 5'- gGGCAUGCUGCCCUGCCUGCCCGUGGCg -3' miRNA: 3'- -CCGUACGACGGGACGGACGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 77298 | 0.78 | 0.150217 |
Target: 5'- cGGC-UGCUGCCCgaccgccacgaacGCCUGCCCcugGGCa -3' miRNA: 3'- -CCGuACGACGGGa------------CGGACGGGca-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 143102 | 0.74 | 0.273767 |
Target: 5'- cGGCGUGUUccaGCCCcGCUcGgCCGUGGCg -3' miRNA: 3'- -CCGUACGA---CGGGaCGGaCgGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 12373 | 0.71 | 0.395145 |
Target: 5'- cGGCGUGCU-CgCCUGCCgcGCUCGccUGGCc -3' miRNA: 3'- -CCGUACGAcG-GGACGGa-CGGGC--ACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 131531 | 0.7 | 0.463121 |
Target: 5'- cGGCGccggGCCCgucaucacgGCCUcGCCCGUGGUc -3' miRNA: 3'- -CCGUacgaCGGGa--------CGGA-CGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 96326 | 0.7 | 0.472944 |
Target: 5'- cGGCAUGCUGCCgcaucucaaggaggaUcugguccgccugGCCgaggGCaCCGUGGCg -3' miRNA: 3'- -CCGUACGACGGg--------------A------------CGGa---CG-GGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 90945 | 0.7 | 0.481059 |
Target: 5'- gGGCggGCUGUgC-GCCgagGCCCG-GGCc -3' miRNA: 3'- -CCGuaCGACGgGaCGGa--CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 33674 | 0.7 | 0.463121 |
Target: 5'- cGCGcucGCUGCgCUcgcugcGCCUGUUCGUGGCg -3' miRNA: 3'- cCGUa--CGACGgGA------CGGACGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 36353 | 0.69 | 0.546249 |
Target: 5'- cGGCGUGCgcgGCCaccgggUGCgC-GCCCGcGGCg -3' miRNA: 3'- -CCGUACGa--CGGg-----ACG-GaCGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 120498 | 0.69 | 0.546249 |
Target: 5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3' miRNA: 3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 16314 | 0.69 | 0.499328 |
Target: 5'- cGGCcgGCUGgauCCC--CCUGCCCcUGGCc -3' miRNA: 3'- -CCGuaCGAC---GGGacGGACGGGcACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 122307 | 0.69 | 0.546249 |
Target: 5'- uGCccGCUGgCCgucGCCgUGCgCGUGGCg -3' miRNA: 3'- cCGuaCGACgGGa--CGG-ACGgGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 131383 | 0.68 | 0.565422 |
Target: 5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3' miRNA: 3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 55649 | 0.68 | 0.613023 |
Target: 5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3' miRNA: 3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 47526 | 0.68 | 0.614 |
Target: 5'- cGGCAccgGCUGCCCUcGCCgauCCCGcaccaGCa -3' miRNA: 3'- -CCGUa--CGACGGGA-CGGac-GGGCac---CG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 131288 | 0.68 | 0.614 |
Target: 5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3' miRNA: 3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 34041 | 0.68 | 0.614 |
Target: 5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3' miRNA: 3'- cCGuACGACGGgaCGGaCGGGCacCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 116140 | 0.68 | 0.564459 |
Target: 5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3' miRNA: 3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 150562 | 0.68 | 0.575075 |
Target: 5'- cGGCGcUGgaGCUCaucaacGCCUGCCCucgGGCg -3' miRNA: 3'- -CCGU-ACgaCGGGa-----CGGACGGGca-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 80440 | 0.68 | 0.614 |
Target: 5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3' miRNA: 3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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