miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 101945 1.13 0.00057
Target:  5'- gGGCAUGCUGCCCUGCCUGCCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGGACGGACGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 77298 0.78 0.150217
Target:  5'- cGGC-UGCUGCCCgaccgccacgaacGCCUGCCCcugGGCa -3'
miRNA:   3'- -CCGuACGACGGGa------------CGGACGGGca-CCG- -5'
10764 3' -61.6 NC_002794.1 + 143102 0.74 0.273767
Target:  5'- cGGCGUGUUccaGCCCcGCUcGgCCGUGGCg -3'
miRNA:   3'- -CCGUACGA---CGGGaCGGaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 12373 0.71 0.395145
Target:  5'- cGGCGUGCU-CgCCUGCCgcGCUCGccUGGCc -3'
miRNA:   3'- -CCGUACGAcG-GGACGGa-CGGGC--ACCG- -5'
10764 3' -61.6 NC_002794.1 + 131531 0.7 0.463121
Target:  5'- cGGCGccggGCCCgucaucacgGCCUcGCCCGUGGUc -3'
miRNA:   3'- -CCGUacgaCGGGa--------CGGA-CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 33674 0.7 0.463121
Target:  5'- cGCGcucGCUGCgCUcgcugcGCCUGUUCGUGGCg -3'
miRNA:   3'- cCGUa--CGACGgGA------CGGACGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 96326 0.7 0.472944
Target:  5'- cGGCAUGCUGCCgcaucucaaggaggaUcugguccgccugGCCgaggGCaCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGg--------------A------------CGGa---CG-GGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 90945 0.7 0.481059
Target:  5'- gGGCggGCUGUgC-GCCgagGCCCG-GGCc -3'
miRNA:   3'- -CCGuaCGACGgGaCGGa--CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 16314 0.69 0.499328
Target:  5'- cGGCcgGCUGgauCCC--CCUGCCCcUGGCc -3'
miRNA:   3'- -CCGuaCGAC---GGGacGGACGGGcACCG- -5'
10764 3' -61.6 NC_002794.1 + 122307 0.69 0.546249
Target:  5'- uGCccGCUGgCCgucGCCgUGCgCGUGGCg -3'
miRNA:   3'- cCGuaCGACgGGa--CGG-ACGgGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 120498 0.69 0.546249
Target:  5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3'
miRNA:   3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 36353 0.69 0.546249
Target:  5'- cGGCGUGCgcgGCCaccgggUGCgC-GCCCGcGGCg -3'
miRNA:   3'- -CCGUACGa--CGGg-----ACG-GaCGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 59026 0.68 0.564459
Target:  5'- uGCGUGCUGCCC-GCgCUcaccaacaaccgcGCCUGcGGCc -3'
miRNA:   3'- cCGUACGACGGGaCG-GA-------------CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 116140 0.68 0.564459
Target:  5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3'
miRNA:   3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5'
10764 3' -61.6 NC_002794.1 + 131383 0.68 0.565422
Target:  5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3'
miRNA:   3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5'
10764 3' -61.6 NC_002794.1 + 150562 0.68 0.575075
Target:  5'- cGGCGcUGgaGCUCaucaacGCCUGCCCucgGGCg -3'
miRNA:   3'- -CCGU-ACgaCGGGa-----CGGACGGGca-CCG- -5'
10764 3' -61.6 NC_002794.1 + 55649 0.68 0.613023
Target:  5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5'
10764 3' -61.6 NC_002794.1 + 131288 0.68 0.614
Target:  5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3'
miRNA:   3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 80440 0.68 0.614
Target:  5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3'
miRNA:   3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5'
10764 3' -61.6 NC_002794.1 + 34041 0.68 0.614
Target:  5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3'
miRNA:   3'- cCGuACGACGGgaCGGaCGGGCacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.