miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 34041 0.68 0.614
Target:  5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3'
miRNA:   3'- cCGuACGACGGgaCGGaCGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 11992 0.67 0.620844
Target:  5'- cGGCugguUGCUGCUgUguggacugaugugcGCCgccgGCCCG-GGCg -3'
miRNA:   3'- -CCGu---ACGACGGgA--------------CGGa---CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 90197 0.67 0.623779
Target:  5'- gGGCAcGgUGCCCgcGCCUccGCCCGccGCg -3'
miRNA:   3'- -CCGUaCgACGGGa-CGGA--CGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 14497 0.67 0.623779
Target:  5'- cGGCG-GCgGCCCgcGCUcgcggcGCUCGUGGCg -3'
miRNA:   3'- -CCGUaCGaCGGGa-CGGa-----CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 90682 0.67 0.633563
Target:  5'- cGCGUgGCUGUUC-GUgUGCCCGcGGCa -3'
miRNA:   3'- cCGUA-CGACGGGaCGgACGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 34771 0.67 0.644324
Target:  5'- cGGCAcgGCcGCCCgcgccagccgagucgGCCgaaccgGCCCG-GGCc -3'
miRNA:   3'- -CCGUa-CGaCGGGa--------------CGGa-----CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 86882 0.67 0.645302
Target:  5'- aGGCAguagGCCCgaucccggcgggGCCgccgacccggugacGCCCGUGGCg -3'
miRNA:   3'- -CCGUacgaCGGGa-----------CGGa-------------CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 545 0.67 0.653121
Target:  5'- uGGCAUcUUGCCCgGCCUcggcgcGgCgGUGGCa -3'
miRNA:   3'- -CCGUAcGACGGGaCGGA------CgGgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 180592 0.67 0.653121
Target:  5'- cGGCAgcaGCUGUCCUcgcGCCgcggGCCaCGacacGGCg -3'
miRNA:   3'- -CCGUa--CGACGGGA---CGGa---CGG-GCa---CCG- -5'
10764 3' -61.6 NC_002794.1 + 138444 0.67 0.653121
Target:  5'- uGGCGgcgGC-GCCUcgGCCUGCgaCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGGa-CGGACGg-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 52816 0.67 0.662881
Target:  5'- cGGCA-GCUcGUCCUGCC-GUUCGUagaGGCc -3'
miRNA:   3'- -CCGUaCGA-CGGGACGGaCGGGCA---CCG- -5'
10764 3' -61.6 NC_002794.1 + 102158 0.67 0.662881
Target:  5'- cGGCGUGC-GCgCCgggGCCa--UCGUGGCg -3'
miRNA:   3'- -CCGUACGaCG-GGa--CGGacgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 111093 0.67 0.662881
Target:  5'- gGGUcgGCggGCCCgGCggGaCCGUGGCc -3'
miRNA:   3'- -CCGuaCGa-CGGGaCGgaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 65753 0.67 0.672618
Target:  5'- cGGCcccGC-GCCgCcGCC-GCCCGUGGUg -3'
miRNA:   3'- -CCGua-CGaCGG-GaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 93091 0.67 0.672618
Target:  5'- gGGC-UGCgGCCuCU-CCUGCCUGgacuucUGGCa -3'
miRNA:   3'- -CCGuACGaCGG-GAcGGACGGGC------ACCG- -5'
10764 3' -61.6 NC_002794.1 + 62287 0.67 0.672618
Target:  5'- cGGCcUGCUGCCgCU-CCgaGCCCGcGcGCa -3'
miRNA:   3'- -CCGuACGACGG-GAcGGa-CGGGCaC-CG- -5'
10764 3' -61.6 NC_002794.1 + 145504 0.66 0.681356
Target:  5'- aGGCGUGCgaaggggUGCgCgagGCCgGCCCGagcgccucgGGCg -3'
miRNA:   3'- -CCGUACG-------ACGgGa--CGGaCGGGCa--------CCG- -5'
10764 3' -61.6 NC_002794.1 + 847 0.66 0.682325
Target:  5'- cGCGUGCguucgGCCCaGCgCgcGCCCGcgaGGCg -3'
miRNA:   3'- cCGUACGa----CGGGaCG-Ga-CGGGCa--CCG- -5'
10764 3' -61.6 NC_002794.1 + 187369 0.66 0.682325
Target:  5'- aGGCGcGCagcaGCUCcGCC-GaCCCGUGGCa -3'
miRNA:   3'- -CCGUaCGa---CGGGaCGGaC-GGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 125833 0.66 0.686197
Target:  5'- cGGCGcccugcUGCUGCgCUGCCggcuggacaagcggGCCgUGUGGg -3'
miRNA:   3'- -CCGU------ACGACGgGACGGa-------------CGG-GCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.