Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10764 | 3' | -61.6 | NC_002794.1 | + | 10963 | 0.66 | 0.691994 |
Target: 5'- gGGCcgGCcgagacGUCCgaUGCCUGCuCCGaGGCc -3' miRNA: 3'- -CCGuaCGa-----CGGG--ACGGACG-GGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 138119 | 0.66 | 0.691994 |
Target: 5'- gGGCGUGgUGCUCgucGCCgGUCuCG-GGCg -3' miRNA: 3'- -CCGUACgACGGGa--CGGaCGG-GCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 148345 | 0.66 | 0.701617 |
Target: 5'- uGGCA-GCUGCUCUGCaacaccuucCCCGaucGGCa -3' miRNA: 3'- -CCGUaCGACGGGACGgac------GGGCa--CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 21879 | 0.66 | 0.710233 |
Target: 5'- aGGCcgGCcgcggggUGUCCgcgGCCUGCgUcggugGUGGCg -3' miRNA: 3'- -CCGuaCG-------ACGGGa--CGGACGgG-----CACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 82165 | 0.66 | 0.711188 |
Target: 5'- cGGCuccgGC-GCCCgaGCCauaaaGCCCG-GGCg -3' miRNA: 3'- -CCGua--CGaCGGGa-CGGa----CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 152419 | 0.66 | 0.711188 |
Target: 5'- ---cUGCUGCCCcggGCC-GUCUGUcGGCa -3' miRNA: 3'- ccguACGACGGGa--CGGaCGGGCA-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 72791 | 0.66 | 0.711188 |
Target: 5'- aGGCuauuaaacGCcGCCCUGCCcGCuCCGUcGCc -3' miRNA: 3'- -CCGua------CGaCGGGACGGaCG-GGCAcCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 93384 | 0.66 | 0.711188 |
Target: 5'- cGCAccUGCUGgCC-GCCUcGCCCaaguucgccuccGUGGCc -3' miRNA: 3'- cCGU--ACGACgGGaCGGA-CGGG------------CACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 751 | 0.66 | 0.720696 |
Target: 5'- gGGCucUGCcGUuuUGCCggGCCCGcGGUg -3' miRNA: 3'- -CCGu-ACGaCGggACGGa-CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 58334 | 0.66 | 0.720696 |
Target: 5'- cGCGUGCUcGUcgggaaCCUGCC-GCUCGgccUGGCg -3' miRNA: 3'- cCGUACGA-CG------GGACGGaCGGGC---ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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