miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 138444 0.67 0.653121
Target:  5'- uGGCGgcgGC-GCCUcgGCCUGCgaCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGGa-CGGACGg-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 545 0.67 0.653121
Target:  5'- uGGCAUcUUGCCCgGCCUcggcgcGgCgGUGGCa -3'
miRNA:   3'- -CCGUAcGACGGGaCGGA------CgGgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 180592 0.67 0.653121
Target:  5'- cGGCAgcaGCUGUCCUcgcGCCgcggGCCaCGacacGGCg -3'
miRNA:   3'- -CCGUa--CGACGGGA---CGGa---CGG-GCa---CCG- -5'
10764 3' -61.6 NC_002794.1 + 86882 0.67 0.645302
Target:  5'- aGGCAguagGCCCgaucccggcgggGCCgccgacccggugacGCCCGUGGCg -3'
miRNA:   3'- -CCGUacgaCGGGa-----------CGGa-------------CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 34771 0.67 0.644324
Target:  5'- cGGCAcgGCcGCCCgcgccagccgagucgGCCgaaccgGCCCG-GGCc -3'
miRNA:   3'- -CCGUa-CGaCGGGa--------------CGGa-----CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 90682 0.67 0.633563
Target:  5'- cGCGUgGCUGUUC-GUgUGCCCGcGGCa -3'
miRNA:   3'- cCGUA-CGACGGGaCGgACGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 14497 0.67 0.623779
Target:  5'- cGGCG-GCgGCCCgcGCUcgcggcGCUCGUGGCg -3'
miRNA:   3'- -CCGUaCGaCGGGa-CGGa-----CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 90197 0.67 0.623779
Target:  5'- gGGCAcGgUGCCCgcGCCUccGCCCGccGCg -3'
miRNA:   3'- -CCGUaCgACGGGa-CGGA--CGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 11992 0.67 0.620844
Target:  5'- cGGCugguUGCUGCUgUguggacugaugugcGCCgccgGCCCG-GGCg -3'
miRNA:   3'- -CCGu---ACGACGGgA--------------CGGa---CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 47526 0.68 0.614
Target:  5'- cGGCAccgGCUGCCCUcGCCgauCCCGcaccaGCa -3'
miRNA:   3'- -CCGUa--CGACGGGA-CGGac-GGGCac---CG- -5'
10764 3' -61.6 NC_002794.1 + 131288 0.68 0.614
Target:  5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3'
miRNA:   3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 80440 0.68 0.614
Target:  5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3'
miRNA:   3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5'
10764 3' -61.6 NC_002794.1 + 34041 0.68 0.614
Target:  5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3'
miRNA:   3'- cCGuACGACGGgaCGGaCGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 55649 0.68 0.613023
Target:  5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5'
10764 3' -61.6 NC_002794.1 + 150562 0.68 0.575075
Target:  5'- cGGCGcUGgaGCUCaucaacGCCUGCCCucgGGCg -3'
miRNA:   3'- -CCGU-ACgaCGGGa-----CGGACGGGca-CCG- -5'
10764 3' -61.6 NC_002794.1 + 131383 0.68 0.565422
Target:  5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3'
miRNA:   3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5'
10764 3' -61.6 NC_002794.1 + 116140 0.68 0.564459
Target:  5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3'
miRNA:   3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5'
10764 3' -61.6 NC_002794.1 + 59026 0.68 0.564459
Target:  5'- uGCGUGCUGCCC-GCgCUcaccaacaaccgcGCCUGcGGCc -3'
miRNA:   3'- cCGUACGACGGGaCG-GA-------------CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 36353 0.69 0.546249
Target:  5'- cGGCGUGCgcgGCCaccgggUGCgC-GCCCGcGGCg -3'
miRNA:   3'- -CCGUACGa--CGGg-----ACG-GaCGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 120498 0.69 0.546249
Target:  5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3'
miRNA:   3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.