miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 545 0.67 0.653121
Target:  5'- uGGCAUcUUGCCCgGCCUcggcgcGgCgGUGGCa -3'
miRNA:   3'- -CCGUAcGACGGGaCGGA------CgGgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 751 0.66 0.720696
Target:  5'- gGGCucUGCcGUuuUGCCggGCCCGcGGUg -3'
miRNA:   3'- -CCGu-ACGaCGggACGGa-CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 847 0.66 0.682325
Target:  5'- cGCGUGCguucgGCCCaGCgCgcGCCCGcgaGGCg -3'
miRNA:   3'- cCGUACGa----CGGGaCG-Ga-CGGGCa--CCG- -5'
10764 3' -61.6 NC_002794.1 + 10963 0.66 0.691994
Target:  5'- gGGCcgGCcgagacGUCCgaUGCCUGCuCCGaGGCc -3'
miRNA:   3'- -CCGuaCGa-----CGGG--ACGGACG-GGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 11992 0.67 0.620844
Target:  5'- cGGCugguUGCUGCUgUguggacugaugugcGCCgccgGCCCG-GGCg -3'
miRNA:   3'- -CCGu---ACGACGGgA--------------CGGa---CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 12373 0.71 0.395145
Target:  5'- cGGCGUGCU-CgCCUGCCgcGCUCGccUGGCc -3'
miRNA:   3'- -CCGUACGAcG-GGACGGa-CGGGC--ACCG- -5'
10764 3' -61.6 NC_002794.1 + 14497 0.67 0.623779
Target:  5'- cGGCG-GCgGCCCgcGCUcgcggcGCUCGUGGCg -3'
miRNA:   3'- -CCGUaCGaCGGGa-CGGa-----CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 16314 0.69 0.499328
Target:  5'- cGGCcgGCUGgauCCC--CCUGCCCcUGGCc -3'
miRNA:   3'- -CCGuaCGAC---GGGacGGACGGGcACCG- -5'
10764 3' -61.6 NC_002794.1 + 21879 0.66 0.710233
Target:  5'- aGGCcgGCcgcggggUGUCCgcgGCCUGCgUcggugGUGGCg -3'
miRNA:   3'- -CCGuaCG-------ACGGGa--CGGACGgG-----CACCG- -5'
10764 3' -61.6 NC_002794.1 + 33674 0.7 0.463121
Target:  5'- cGCGcucGCUGCgCUcgcugcGCCUGUUCGUGGCg -3'
miRNA:   3'- cCGUa--CGACGgGA------CGGACGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 34041 0.68 0.614
Target:  5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3'
miRNA:   3'- cCGuACGACGGgaCGGaCGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 34771 0.67 0.644324
Target:  5'- cGGCAcgGCcGCCCgcgccagccgagucgGCCgaaccgGCCCG-GGCc -3'
miRNA:   3'- -CCGUa-CGaCGGGa--------------CGGa-----CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 36353 0.69 0.546249
Target:  5'- cGGCGUGCgcgGCCaccgggUGCgC-GCCCGcGGCg -3'
miRNA:   3'- -CCGUACGa--CGGg-----ACG-GaCGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 47526 0.68 0.614
Target:  5'- cGGCAccgGCUGCCCUcGCCgauCCCGcaccaGCa -3'
miRNA:   3'- -CCGUa--CGACGGGA-CGGac-GGGCac---CG- -5'
10764 3' -61.6 NC_002794.1 + 52816 0.67 0.662881
Target:  5'- cGGCA-GCUcGUCCUGCC-GUUCGUagaGGCc -3'
miRNA:   3'- -CCGUaCGA-CGGGACGGaCGGGCA---CCG- -5'
10764 3' -61.6 NC_002794.1 + 55649 0.68 0.613023
Target:  5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5'
10764 3' -61.6 NC_002794.1 + 58334 0.66 0.720696
Target:  5'- cGCGUGCUcGUcgggaaCCUGCC-GCUCGgccUGGCg -3'
miRNA:   3'- cCGUACGA-CG------GGACGGaCGGGC---ACCG- -5'
10764 3' -61.6 NC_002794.1 + 59026 0.68 0.564459
Target:  5'- uGCGUGCUGCCC-GCgCUcaccaacaaccgcGCCUGcGGCc -3'
miRNA:   3'- cCGUACGACGGGaCG-GA-------------CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 62287 0.67 0.672618
Target:  5'- cGGCcUGCUGCCgCU-CCgaGCCCGcGcGCa -3'
miRNA:   3'- -CCGuACGACGG-GAcGGa-CGGGCaC-CG- -5'
10764 3' -61.6 NC_002794.1 + 65753 0.67 0.672618
Target:  5'- cGGCcccGC-GCCgCcGCC-GCCCGUGGUg -3'
miRNA:   3'- -CCGua-CGaCGG-GaCGGaCGGGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.