miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 72791 0.66 0.711188
Target:  5'- aGGCuauuaaacGCcGCCCUGCCcGCuCCGUcGCc -3'
miRNA:   3'- -CCGua------CGaCGGGACGGaCG-GGCAcCG- -5'
10764 3' -61.6 NC_002794.1 + 77298 0.78 0.150217
Target:  5'- cGGC-UGCUGCCCgaccgccacgaacGCCUGCCCcugGGCa -3'
miRNA:   3'- -CCGuACGACGGGa------------CGGACGGGca-CCG- -5'
10764 3' -61.6 NC_002794.1 + 80440 0.68 0.614
Target:  5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3'
miRNA:   3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5'
10764 3' -61.6 NC_002794.1 + 82165 0.66 0.711188
Target:  5'- cGGCuccgGC-GCCCgaGCCauaaaGCCCG-GGCg -3'
miRNA:   3'- -CCGua--CGaCGGGa-CGGa----CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 86882 0.67 0.645302
Target:  5'- aGGCAguagGCCCgaucccggcgggGCCgccgacccggugacGCCCGUGGCg -3'
miRNA:   3'- -CCGUacgaCGGGa-----------CGGa-------------CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 90197 0.67 0.623779
Target:  5'- gGGCAcGgUGCCCgcGCCUccGCCCGccGCg -3'
miRNA:   3'- -CCGUaCgACGGGa-CGGA--CGGGCacCG- -5'
10764 3' -61.6 NC_002794.1 + 90682 0.67 0.633563
Target:  5'- cGCGUgGCUGUUC-GUgUGCCCGcGGCa -3'
miRNA:   3'- cCGUA-CGACGGGaCGgACGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 90945 0.7 0.481059
Target:  5'- gGGCggGCUGUgC-GCCgagGCCCG-GGCc -3'
miRNA:   3'- -CCGuaCGACGgGaCGGa--CGGGCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 93091 0.67 0.672618
Target:  5'- gGGC-UGCgGCCuCU-CCUGCCUGgacuucUGGCa -3'
miRNA:   3'- -CCGuACGaCGG-GAcGGACGGGC------ACCG- -5'
10764 3' -61.6 NC_002794.1 + 93384 0.66 0.711188
Target:  5'- cGCAccUGCUGgCC-GCCUcGCCCaaguucgccuccGUGGCc -3'
miRNA:   3'- cCGU--ACGACgGGaCGGA-CGGG------------CACCG- -5'
10764 3' -61.6 NC_002794.1 + 96326 0.7 0.472944
Target:  5'- cGGCAUGCUGCCgcaucucaaggaggaUcugguccgccugGCCgaggGCaCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGg--------------A------------CGGa---CG-GGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 101945 1.13 0.00057
Target:  5'- gGGCAUGCUGCCCUGCCUGCCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGGACGGACGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 102158 0.67 0.662881
Target:  5'- cGGCGUGC-GCgCCgggGCCa--UCGUGGCg -3'
miRNA:   3'- -CCGUACGaCG-GGa--CGGacgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 111093 0.67 0.662881
Target:  5'- gGGUcgGCggGCCCgGCggGaCCGUGGCc -3'
miRNA:   3'- -CCGuaCGa-CGGGaCGgaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 116140 0.68 0.564459
Target:  5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3'
miRNA:   3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5'
10764 3' -61.6 NC_002794.1 + 120498 0.69 0.546249
Target:  5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3'
miRNA:   3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 122307 0.69 0.546249
Target:  5'- uGCccGCUGgCCgucGCCgUGCgCGUGGCg -3'
miRNA:   3'- cCGuaCGACgGGa--CGG-ACGgGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 125833 0.66 0.686197
Target:  5'- cGGCGcccugcUGCUGCgCUGCCggcuggacaagcggGCCgUGUGGg -3'
miRNA:   3'- -CCGU------ACGACGgGACGGa-------------CGG-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 131288 0.68 0.614
Target:  5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3'
miRNA:   3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 131383 0.68 0.565422
Target:  5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3'
miRNA:   3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.