miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 3' -61.6 NC_002794.1 + 187369 0.66 0.682325
Target:  5'- aGGCGcGCagcaGCUCcGCC-GaCCCGUGGCa -3'
miRNA:   3'- -CCGUaCGa---CGGGaCGGaC-GGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 180592 0.67 0.653121
Target:  5'- cGGCAgcaGCUGUCCUcgcGCCgcggGCCaCGacacGGCg -3'
miRNA:   3'- -CCGUa--CGACGGGA---CGGa---CGG-GCa---CCG- -5'
10764 3' -61.6 NC_002794.1 + 152419 0.66 0.711188
Target:  5'- ---cUGCUGCCCcggGCC-GUCUGUcGGCa -3'
miRNA:   3'- ccguACGACGGGa--CGGaCGGGCA-CCG- -5'
10764 3' -61.6 NC_002794.1 + 150562 0.68 0.575075
Target:  5'- cGGCGcUGgaGCUCaucaacGCCUGCCCucgGGCg -3'
miRNA:   3'- -CCGU-ACgaCGGGa-----CGGACGGGca-CCG- -5'
10764 3' -61.6 NC_002794.1 + 148345 0.66 0.701617
Target:  5'- uGGCA-GCUGCUCUGCaacaccuucCCCGaucGGCa -3'
miRNA:   3'- -CCGUaCGACGGGACGgac------GGGCa--CCG- -5'
10764 3' -61.6 NC_002794.1 + 145504 0.66 0.681356
Target:  5'- aGGCGUGCgaaggggUGCgCgagGCCgGCCCGagcgccucgGGCg -3'
miRNA:   3'- -CCGUACG-------ACGgGa--CGGaCGGGCa--------CCG- -5'
10764 3' -61.6 NC_002794.1 + 143102 0.74 0.273767
Target:  5'- cGGCGUGUUccaGCCCcGCUcGgCCGUGGCg -3'
miRNA:   3'- -CCGUACGA---CGGGaCGGaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 138444 0.67 0.653121
Target:  5'- uGGCGgcgGC-GCCUcgGCCUGCgaCGUGGa -3'
miRNA:   3'- -CCGUa--CGaCGGGa-CGGACGg-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 138119 0.66 0.691994
Target:  5'- gGGCGUGgUGCUCgucGCCgGUCuCG-GGCg -3'
miRNA:   3'- -CCGUACgACGGGa--CGGaCGG-GCaCCG- -5'
10764 3' -61.6 NC_002794.1 + 131531 0.7 0.463121
Target:  5'- cGGCGccggGCCCgucaucacgGCCUcGCCCGUGGUc -3'
miRNA:   3'- -CCGUacgaCGGGa--------CGGA-CGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 131383 0.68 0.565422
Target:  5'- uGGUcgGCgccgcGCCCgucaucacgGCCUcGCCCGUgaucGGCa -3'
miRNA:   3'- -CCGuaCGa----CGGGa--------CGGA-CGGGCA----CCG- -5'
10764 3' -61.6 NC_002794.1 + 131288 0.68 0.614
Target:  5'- cGGCGccGUcGCUCcGCC-GCCCGUGGUc -3'
miRNA:   3'- -CCGUa-CGaCGGGaCGGaCGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 125833 0.66 0.686197
Target:  5'- cGGCGcccugcUGCUGCgCUGCCggcuggacaagcggGCCgUGUGGg -3'
miRNA:   3'- -CCGU------ACGACGgGACGGa-------------CGG-GCACCg -5'
10764 3' -61.6 NC_002794.1 + 122307 0.69 0.546249
Target:  5'- uGCccGCUGgCCgucGCCgUGCgCGUGGCg -3'
miRNA:   3'- cCGuaCGACgGGa--CGG-ACGgGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 120498 0.69 0.546249
Target:  5'- aGGCGcUGCaGCCCgugggcaGCCUGCaggCgGUGGCc -3'
miRNA:   3'- -CCGU-ACGaCGGGa------CGGACG---GgCACCG- -5'
10764 3' -61.6 NC_002794.1 + 116140 0.68 0.564459
Target:  5'- cGGCGgcgGCgGCCaggGCCUGCaccgccuCCGUGGg -3'
miRNA:   3'- -CCGUa--CGaCGGga-CGGACG-------GGCACCg -5'
10764 3' -61.6 NC_002794.1 + 111093 0.67 0.662881
Target:  5'- gGGUcgGCggGCCCgGCggGaCCGUGGCc -3'
miRNA:   3'- -CCGuaCGa-CGGGaCGgaCgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 102158 0.67 0.662881
Target:  5'- cGGCGUGC-GCgCCgggGCCa--UCGUGGCg -3'
miRNA:   3'- -CCGUACGaCG-GGa--CGGacgGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 101945 1.13 0.00057
Target:  5'- gGGCAUGCUGCCCUGCCUGCCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGGACGGACGGGCACCG- -5'
10764 3' -61.6 NC_002794.1 + 96326 0.7 0.472944
Target:  5'- cGGCAUGCUGCCgcaucucaaggaggaUcugguccgccugGCCgaggGCaCCGUGGCg -3'
miRNA:   3'- -CCGUACGACGGg--------------A------------CGGa---CG-GGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.