Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10764 | 3' | -61.6 | NC_002794.1 | + | 93384 | 0.66 | 0.711188 |
Target: 5'- cGCAccUGCUGgCC-GCCUcGCCCaaguucgccuccGUGGCc -3' miRNA: 3'- cCGU--ACGACgGGaCGGA-CGGG------------CACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 93091 | 0.67 | 0.672618 |
Target: 5'- gGGC-UGCgGCCuCU-CCUGCCUGgacuucUGGCa -3' miRNA: 3'- -CCGuACGaCGG-GAcGGACGGGC------ACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 90945 | 0.7 | 0.481059 |
Target: 5'- gGGCggGCUGUgC-GCCgagGCCCG-GGCc -3' miRNA: 3'- -CCGuaCGACGgGaCGGa--CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 90682 | 0.67 | 0.633563 |
Target: 5'- cGCGUgGCUGUUC-GUgUGCCCGcGGCa -3' miRNA: 3'- cCGUA-CGACGGGaCGgACGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 90197 | 0.67 | 0.623779 |
Target: 5'- gGGCAcGgUGCCCgcGCCUccGCCCGccGCg -3' miRNA: 3'- -CCGUaCgACGGGa-CGGA--CGGGCacCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 86882 | 0.67 | 0.645302 |
Target: 5'- aGGCAguagGCCCgaucccggcgggGCCgccgacccggugacGCCCGUGGCg -3' miRNA: 3'- -CCGUacgaCGGGa-----------CGGa-------------CGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 82165 | 0.66 | 0.711188 |
Target: 5'- cGGCuccgGC-GCCCgaGCCauaaaGCCCG-GGCg -3' miRNA: 3'- -CCGua--CGaCGGGa-CGGa----CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 80440 | 0.68 | 0.614 |
Target: 5'- cGCcgGCgGCC--GCCgGCCCGUcGGCg -3' miRNA: 3'- cCGuaCGaCGGgaCGGaCGGGCA-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 77298 | 0.78 | 0.150217 |
Target: 5'- cGGC-UGCUGCCCgaccgccacgaacGCCUGCCCcugGGCa -3' miRNA: 3'- -CCGuACGACGGGa------------CGGACGGGca-CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 72791 | 0.66 | 0.711188 |
Target: 5'- aGGCuauuaaacGCcGCCCUGCCcGCuCCGUcGCc -3' miRNA: 3'- -CCGua------CGaCGGGACGGaCG-GGCAcCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 65753 | 0.67 | 0.672618 |
Target: 5'- cGGCcccGC-GCCgCcGCC-GCCCGUGGUg -3' miRNA: 3'- -CCGua-CGaCGG-GaCGGaCGGGCACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 62287 | 0.67 | 0.672618 |
Target: 5'- cGGCcUGCUGCCgCU-CCgaGCCCGcGcGCa -3' miRNA: 3'- -CCGuACGACGG-GAcGGa-CGGGCaC-CG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 59026 | 0.68 | 0.564459 |
Target: 5'- uGCGUGCUGCCC-GCgCUcaccaacaaccgcGCCUGcGGCc -3' miRNA: 3'- cCGUACGACGGGaCG-GA-------------CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 58334 | 0.66 | 0.720696 |
Target: 5'- cGCGUGCUcGUcgggaaCCUGCC-GCUCGgccUGGCg -3' miRNA: 3'- cCGUACGA-CG------GGACGGaCGGGC---ACCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 55649 | 0.68 | 0.613023 |
Target: 5'- cGGCAggcGCaGCCCcgacauggUGCgcgccuuCUGCCCGUGGa -3' miRNA: 3'- -CCGUa--CGaCGGG--------ACG-------GACGGGCACCg -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 52816 | 0.67 | 0.662881 |
Target: 5'- cGGCA-GCUcGUCCUGCC-GUUCGUagaGGCc -3' miRNA: 3'- -CCGUaCGA-CGGGACGGaCGGGCA---CCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 47526 | 0.68 | 0.614 |
Target: 5'- cGGCAccgGCUGCCCUcGCCgauCCCGcaccaGCa -3' miRNA: 3'- -CCGUa--CGACGGGA-CGGac-GGGCac---CG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 36353 | 0.69 | 0.546249 |
Target: 5'- cGGCGUGCgcgGCCaccgggUGCgC-GCCCGcGGCg -3' miRNA: 3'- -CCGUACGa--CGGg-----ACG-GaCGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 34771 | 0.67 | 0.644324 |
Target: 5'- cGGCAcgGCcGCCCgcgccagccgagucgGCCgaaccgGCCCG-GGCc -3' miRNA: 3'- -CCGUa-CGaCGGGa--------------CGGa-----CGGGCaCCG- -5' |
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10764 | 3' | -61.6 | NC_002794.1 | + | 34041 | 0.68 | 0.614 |
Target: 5'- cGCcUGCUGCCggGCCgGCCCGc-GCa -3' miRNA: 3'- cCGuACGACGGgaCGGaCGGGCacCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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