miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 181286 0.65 0.931225
Target:  5'- aCGCCGCGAacaccacccccaGGCCgagcaggaucagcGCGACGUGCa- -3'
miRNA:   3'- aGUGGUGCUag----------CCGG-------------CGCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 78409 0.66 0.930723
Target:  5'- cUCGCCGCGAcucUccgcucccggcgucaCGGUCGCGGCGgacgcggacgcGCUCg -3'
miRNA:   3'- -AGUGGUGCU---A---------------GCCGGCGCUGUa----------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 131400 0.66 0.928689
Target:  5'- gUCAUCACGGccUCGcCCGUGAUcgGCa- -3'
miRNA:   3'- -AGUGGUGCU--AGCcGGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 179984 0.66 0.928689
Target:  5'- -aGCCaagGCGGU-GGCCGCGACG-GCg- -3'
miRNA:   3'- agUGG---UGCUAgCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 90393 0.66 0.928689
Target:  5'- cCGuCCGCGAUCgGGCUGC-ACGUGagcaUCg -3'
miRNA:   3'- aGU-GGUGCUAG-CCGGCGcUGUACg---AG- -5'
10764 5' -56.7 NC_002794.1 + 148143 0.66 0.928689
Target:  5'- cCGCCgggGCGAgggCGGUCGCGACGgaaggagggGgUCg -3'
miRNA:   3'- aGUGG---UGCUa--GCCGGCGCUGUa--------CgAG- -5'
10764 5' -56.7 NC_002794.1 + 190346 0.66 0.928175
Target:  5'- -aACUGCGucaggucGUCGGCCGCGcggcgcagcGgGUGCUCc -3'
miRNA:   3'- agUGGUGC-------UAGCCGGCGC---------UgUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 63671 0.66 0.923446
Target:  5'- -gACgACGAgcgCGGCCGCGGCGa---- -3'
miRNA:   3'- agUGgUGCUa--GCCGGCGCUGUacgag -5'
10764 5' -56.7 NC_002794.1 + 193325 0.66 0.923446
Target:  5'- gCGCC-CGAUCGGUUccagGCGGuCGUGCg- -3'
miRNA:   3'- aGUGGuGCUAGCCGG----CGCU-GUACGag -5'
10764 5' -56.7 NC_002794.1 + 111636 0.66 0.923446
Target:  5'- cCGCCGcCGGUCGggcGCCGCGGCcgcgGC-Ca -3'
miRNA:   3'- aGUGGU-GCUAGC---CGGCGCUGua--CGaG- -5'
10764 5' -56.7 NC_002794.1 + 127178 0.66 0.923446
Target:  5'- cUCGCCGCaGUCGucGCCGCGGCc-GCa- -3'
miRNA:   3'- -AGUGGUGcUAGC--CGGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 108211 0.66 0.923446
Target:  5'- cCGCCGCGc-CGGCCucgcgcccuGCGGCAauccGCUCu -3'
miRNA:   3'- aGUGGUGCuaGCCGG---------CGCUGUa---CGAG- -5'
10764 5' -56.7 NC_002794.1 + 10341 0.66 0.923446
Target:  5'- gCGCCGCGAcCGGgUGacgGAC-UGCUCg -3'
miRNA:   3'- aGUGGUGCUaGCCgGCg--CUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 61870 0.66 0.922909
Target:  5'- aCGCCGCGcgccgucGUCGGCgccgCGCGGCGaGCg- -3'
miRNA:   3'- aGUGGUGC-------UAGCCG----GCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 184035 0.66 0.921828
Target:  5'- gCACCGCGcgCagcgcgcggucgcgGGCCGCGGCGaagcgGCa- -3'
miRNA:   3'- aGUGGUGCuaG--------------CCGGCGCUGUa----CGag -5'
10764 5' -56.7 NC_002794.1 + 56340 0.66 0.921828
Target:  5'- aCGCgGCGAagagcagcucgaagaGGCgGuCGACGUGCUCg -3'
miRNA:   3'- aGUGgUGCUag-------------CCGgC-GCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 183828 0.66 0.917973
Target:  5'- cCACCGCcuccGUC-GCCGaCGACAgGCUCu -3'
miRNA:   3'- aGUGGUGc---UAGcCGGC-GCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 121831 0.66 0.917973
Target:  5'- aUCGCUACGA-CGGCCaaGGCAaGUUUc -3'
miRNA:   3'- -AGUGGUGCUaGCCGGcgCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 114703 0.66 0.917973
Target:  5'- cUC-CUGCGAgacggaCGGCgGCGGCGgcgGCUCc -3'
miRNA:   3'- -AGuGGUGCUa-----GCCGgCGCUGUa--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 181573 0.66 0.917973
Target:  5'- -aAUCAgGAUCgacaggcugcgGGCCGCGACcgGgUCg -3'
miRNA:   3'- agUGGUgCUAG-----------CCGGCGCUGuaCgAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.