Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10764 | 5' | -56.7 | NC_002794.1 | + | 101979 | 1.1 | 0.00291 |
Target: 5'- aUCACCACGAUCGGCCGCGACAUGCUCu -3' miRNA: 3'- -AGUGGUGCUAGCCGGCGCUGUACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 32807 | 0.82 | 0.193879 |
Target: 5'- uUCGCCGCGAccgucgucuucgUCGGCCucGCGGCcgGCUCa -3' miRNA: 3'- -AGUGGUGCU------------AGCCGG--CGCUGuaCGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 129514 | 0.79 | 0.303443 |
Target: 5'- cCGCCGCGGUCGGCgCGCuGACAcgGUUCc -3' miRNA: 3'- aGUGGUGCUAGCCG-GCG-CUGUa-CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 49406 | 0.78 | 0.339237 |
Target: 5'- -gGCCACGG-CGGCCGCGGCGgcgGCg- -3' miRNA: 3'- agUGGUGCUaGCCGGCGCUGUa--CGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 49015 | 0.77 | 0.377997 |
Target: 5'- gCGCCGCGG-CGGCCGCGGCGUcGUcCg -3' miRNA: 3'- aGUGGUGCUaGCCGGCGCUGUA-CGaG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 66854 | 0.76 | 0.402641 |
Target: 5'- gUCGgCGCGGcgaGGCCGCGGCGUGCg- -3' miRNA: 3'- -AGUgGUGCUag-CCGGCGCUGUACGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 84749 | 0.76 | 0.394313 |
Target: 5'- aCGCCACGAcCGGCCGCGAgAggGC-Cg -3' miRNA: 3'- aGUGGUGCUaGCCGGCGCUgUa-CGaG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 58303 | 0.75 | 0.481372 |
Target: 5'- gCACCACGAgaccGCCGCGcucugcacgccgcGCGUGCUCg -3' miRNA: 3'- aGUGGUGCUagc-CGGCGC-------------UGUACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 115825 | 0.75 | 0.445897 |
Target: 5'- cCGCCugGAUCGGCgGggccCGGCggGCUCg -3' miRNA: 3'- aGUGGugCUAGCCGgC----GCUGuaCGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 82793 | 0.74 | 0.520081 |
Target: 5'- cCGCCGCGuccacgCGcGCCGCGACccgcgGCUCg -3' miRNA: 3'- aGUGGUGCua----GC-CGGCGCUGua---CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 154120 | 0.74 | 0.491626 |
Target: 5'- gUCACCGgGAUCGGCgGCGAUcagGCg- -3' miRNA: 3'- -AGUGGUgCUAGCCGgCGCUGua-CGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 104445 | 0.74 | 0.51052 |
Target: 5'- cCGCCGCGggCGGCCcgagcccggGCGGCGUGUg- -3' miRNA: 3'- aGUGGUGCuaGCCGG---------CGCUGUACGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 192491 | 0.74 | 0.491626 |
Target: 5'- cCGCCuCGucccaCGGCCGCGACA-GCUCc -3' miRNA: 3'- aGUGGuGCua---GCCGGCGCUGUaCGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 126967 | 0.74 | 0.529711 |
Target: 5'- -gACCGCGAgagCGGCCGCGuguugGUGCUa -3' miRNA: 3'- agUGGUGCUa--GCCGGCGCug---UACGAg -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 93730 | 0.74 | 0.539406 |
Target: 5'- gCGCCGC--UCGcGCCGCGAgacCGUGCUCu -3' miRNA: 3'- aGUGGUGcuAGC-CGGCGCU---GUACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 185468 | 0.74 | 0.491626 |
Target: 5'- aCGCCGCGGgcggCGGCCGCGGCGa---- -3' miRNA: 3'- aGUGGUGCUa---GCCGGCGCUGUacgag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 71737 | 0.73 | 0.568825 |
Target: 5'- cCGCCACGccgaaGGCCGCcGCcgGCUCu -3' miRNA: 3'- aGUGGUGCuag--CCGGCGcUGuaCGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 16301 | 0.73 | 0.588661 |
Target: 5'- -aGCCugG--CGGCCGCGGCcgGCUg -3' miRNA: 3'- agUGGugCuaGCCGGCGCUGuaCGAg -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 143016 | 0.73 | 0.54916 |
Target: 5'- gUCAgCguGCGGUCGGCCGgguCGACGUGCa- -3' miRNA: 3'- -AGUgG--UGCUAGCCGGC---GCUGUACGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 18746 | 0.73 | 0.578725 |
Target: 5'- aCGCCACGA-CGGCCGgCGGCAacGaCUCu -3' miRNA: 3'- aGUGGUGCUaGCCGGC-GCUGUa-C-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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