miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 101979 1.1 0.00291
Target:  5'- aUCACCACGAUCGGCCGCGACAUGCUCu -3'
miRNA:   3'- -AGUGGUGCUAGCCGGCGCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 32807 0.82 0.193879
Target:  5'- uUCGCCGCGAccgucgucuucgUCGGCCucGCGGCcgGCUCa -3'
miRNA:   3'- -AGUGGUGCU------------AGCCGG--CGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 129514 0.79 0.303443
Target:  5'- cCGCCGCGGUCGGCgCGCuGACAcgGUUCc -3'
miRNA:   3'- aGUGGUGCUAGCCG-GCG-CUGUa-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 49406 0.78 0.339237
Target:  5'- -gGCCACGG-CGGCCGCGGCGgcgGCg- -3'
miRNA:   3'- agUGGUGCUaGCCGGCGCUGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 49015 0.77 0.377997
Target:  5'- gCGCCGCGG-CGGCCGCGGCGUcGUcCg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCUGUA-CGaG- -5'
10764 5' -56.7 NC_002794.1 + 84749 0.76 0.394313
Target:  5'- aCGCCACGAcCGGCCGCGAgAggGC-Cg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCUgUa-CGaG- -5'
10764 5' -56.7 NC_002794.1 + 66854 0.76 0.402641
Target:  5'- gUCGgCGCGGcgaGGCCGCGGCGUGCg- -3'
miRNA:   3'- -AGUgGUGCUag-CCGGCGCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 115825 0.75 0.445897
Target:  5'- cCGCCugGAUCGGCgGggccCGGCggGCUCg -3'
miRNA:   3'- aGUGGugCUAGCCGgC----GCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 58303 0.75 0.481372
Target:  5'- gCACCACGAgaccGCCGCGcucugcacgccgcGCGUGCUCg -3'
miRNA:   3'- aGUGGUGCUagc-CGGCGC-------------UGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 154120 0.74 0.491626
Target:  5'- gUCACCGgGAUCGGCgGCGAUcagGCg- -3'
miRNA:   3'- -AGUGGUgCUAGCCGgCGCUGua-CGag -5'
10764 5' -56.7 NC_002794.1 + 192491 0.74 0.491626
Target:  5'- cCGCCuCGucccaCGGCCGCGACA-GCUCc -3'
miRNA:   3'- aGUGGuGCua---GCCGGCGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 185468 0.74 0.491626
Target:  5'- aCGCCGCGGgcggCGGCCGCGGCGa---- -3'
miRNA:   3'- aGUGGUGCUa---GCCGGCGCUGUacgag -5'
10764 5' -56.7 NC_002794.1 + 104445 0.74 0.51052
Target:  5'- cCGCCGCGggCGGCCcgagcccggGCGGCGUGUg- -3'
miRNA:   3'- aGUGGUGCuaGCCGG---------CGCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 82793 0.74 0.520081
Target:  5'- cCGCCGCGuccacgCGcGCCGCGACccgcgGCUCg -3'
miRNA:   3'- aGUGGUGCua----GC-CGGCGCUGua---CGAG- -5'
10764 5' -56.7 NC_002794.1 + 126967 0.74 0.529711
Target:  5'- -gACCGCGAgagCGGCCGCGuguugGUGCUa -3'
miRNA:   3'- agUGGUGCUa--GCCGGCGCug---UACGAg -5'
10764 5' -56.7 NC_002794.1 + 93730 0.74 0.539406
Target:  5'- gCGCCGC--UCGcGCCGCGAgacCGUGCUCu -3'
miRNA:   3'- aGUGGUGcuAGC-CGGCGCU---GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 143016 0.73 0.54916
Target:  5'- gUCAgCguGCGGUCGGCCGgguCGACGUGCa- -3'
miRNA:   3'- -AGUgG--UGCUAGCCGGC---GCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 32301 0.73 0.558968
Target:  5'- cCGCCGCGG-CGGCCGCG-CcgGC-Cg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCuGuaCGaG- -5'
10764 5' -56.7 NC_002794.1 + 138821 0.73 0.568825
Target:  5'- cCGCCGCGGucUCGaGCuCGCGACcggGCUCu -3'
miRNA:   3'- aGUGGUGCU--AGC-CG-GCGCUGua-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 71737 0.73 0.568825
Target:  5'- cCGCCACGccgaaGGCCGCcGCcgGCUCu -3'
miRNA:   3'- aGUGGUGCuag--CCGGCGcUGuaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.